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Discovery and Characterization of Bukakata orbivirus (Reoviridae:Orbivirus), a Novel Virus from a Ugandan Bat

CITE Title : Discovery and Characterization of Bukakata orbivirus (Reoviridae:Orbivirus), a Novel Virus from a Ugandan Bat Personal Author(s) : Fagre, Anna C.;Lee, Justin S.;Kityo, Robert M.;Bergren, Nicholas A.;Mossel, Eric C.;Nakayiki, Teddy;Nalikka, Betty;Nyakarahuka, Luke;Gilbert, Amy T.;Peterhans, Julian Kerbis;Crabtree, Mary B.;Towner, Jonathan S.;Amman, Brian R.;Sealy, Tara K.;Schuh, Amy J.;Nichol, Stuart T.;Lutwama, Julius J.;Miller, Barry R.;Kading, Rebekah C.; Published Date : March 02 2019 Source : Viruses. 2019; 11(3) URL : https://stacks.cdc.gov/view/cdc/77773 Fagre, Anna C. et al. (2019). Discovery and Characterization of Bukakata orbivirus (Reoviridae:Orbivirus), a Novel Virus from a Ugandan Bat. 11(3). Fagre, Anna C. et al. "Discovery and Characterization of Bukakata orbivirus (Reoviridae:Orbivirus), a Novel Virus from a Ugandan Bat" 11, no. 3 (2019) Fagre, Anna C. et al. "Discovery and Characterization of Bukakata orbivirus (Reoviridae:Orbivirus), a Novel Virus from a Ugandan Bat" vol. 11, no. 3, 2019 Export RIS Citation Information.

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Fagre, Anna C. ;

Lee, Justin S.

March 02 2019 | Viruses. 2019; 11(3)

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While serological and virological evidence documents the exposure of bats to medically-important arboviruses, their role as reservoirs or amplifying h...
Neisseria genomics: current status and future perspectives

CITE Title : Neisseria genomics: current status and future perspectives Personal Author(s) : Harrison, Odile B.;Schoen, Christoph;Retchless, Adam C.;Wang, Xin;Jolley, Keith A.;Bray, James E;Maiden, Martin C. J.; Published Date : Aug 31 2017 Source : Pathog Dis. 2017; 75(6). URL : https://stacks.cdc.gov/view/cdc/57161 Harrison, Odile B. et al. (2017). Neisseria genomics: current status and future perspectives. 75(6). Harrison, Odile B. et al. "Neisseria genomics: current status and future perspectives" 75, no. 6 (2017) Harrison, Odile B. et al. "Neisseria genomics: current status and future perspectives" vol. 75, no. 6, 2017 Export RIS Citation Information.

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Harrison, Odile B. ;

Schoen, Christoph

Aug 31 2017 | Pathog Dis. 2017; 75(6).

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High-throughput whole genome sequencing has unlocked a multitude of possibilities enabling members of the Neisseria genus to be examined with unpreced...
Improving newborn screening for cystic fibrosis using next-generation sequencing technology: a technical feasibility study

CITE Title : Improving newborn screening for cystic fibrosis using next-generation sequencing technology: a technical feasibility study Personal Author(s) : Baker, Mei W.;Atkins, Anne E.;Cordovado, Suzanne K.;Hendrix, Miyono;Earley, Marie C.;Farrell, Philip M.; Published Date : Feb 12 2015 Source : Genet Med. 18(3):231-238. URL : https://stacks.cdc.gov/view/cdc/38577 Baker, Mei W. et al. (2015). Improving newborn screening for cystic fibrosis using next-generation sequencing technology: a technical feasibility study. 18(3). Baker, Mei W. et al. "Improving newborn screening for cystic fibrosis using next-generation sequencing technology: a technical feasibility study" 18, no. 3 (2015) Baker, Mei W. et al. "Improving newborn screening for cystic fibrosis using next-generation sequencing technology: a technical feasibility study" vol. 18, no. 3, 2015 Export RIS Citation Information.

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Baker, Mei W. ;

Atkins, Anne E.

Feb 12 2015 | Genet Med. 18(3):231-238.

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PurposeMany regions have implemented newborn screening (NBS) for cystic fibrosis (CF) using a limited panel of cystic fibrosis transmembrane regulator...
Nanomicroarray and Multiplex Next-Generation Sequencing for Simultaneous Identification and Characterization of Influenza Viruses

CITE Title : Nanomicroarray and Multiplex Next-Generation Sequencing for Simultaneous Identification and Characterization of Influenza Viruses Personal Author(s) : Zhao, Jiangqin;Ragupathy, Viswanath;Liu, Jikun;Wang, Xue;Vemula, Sai Vikram;El Mubarak, Haja Sittana;Ye, Zhiping;Landry, Marie L.;Hewlett, Indira; Published Date : Mar 2015 Source : Emerg Infect Dis. 21(3):400-408. URL : https://stacks.cdc.gov/view/cdc/28101 Zhao, Jiangqin et al. (2015). Nanomicroarray and Multiplex Next-Generation Sequencing for Simultaneous Identification and Characterization of Influenza Viruses. 21(3). Zhao, Jiangqin et al. "Nanomicroarray and Multiplex Next-Generation Sequencing for Simultaneous Identification and Characterization of Influenza Viruses" 21, no. 3 (2015) Zhao, Jiangqin et al. "Nanomicroarray and Multiplex Next-Generation Sequencing for Simultaneous Identification and Characterization of Influenza Viruses" vol. 21, no. 3, 2015 Export RIS Citation Information.

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Zhao, Jiangqin ;

Ragupathy, Viswanath

Mar 2015 | Emerg Infect Dis. 21(3):400-408.

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Conventional methods for detection and discrimination of influenza viruses are time consuming and labor intensive. We developed a diagnostic platform ...
Newborn Screening Quality Assurance Program for CFTR Mutation Detection and Gene Sequencing to Identify Cystic Fibrosis

CITE Title : Newborn Screening Quality Assurance Program for CFTR Mutation Detection and Gene Sequencing to Identify Cystic Fibrosis Personal Author(s) : Hendrix, Miyono M.;Foster, Stephanie L.;Cordovado, Suzanne K.; Published Date : 2016 Jan-Dec Source : J Inborn Errors Metab Screen. 4 URL : https://stacks.cdc.gov/view/cdc/45399 Hendrix, Miyono M. et al. (2016). Newborn Screening Quality Assurance Program for CFTR Mutation Detection and Gene Sequencing to Identify Cystic Fibrosis. 4 Hendrix, Miyono M. and Foster, Stephanie L. and Cordovado, Suzanne K. "Newborn Screening Quality Assurance Program for CFTR Mutation Detection and Gene Sequencing to Identify Cystic Fibrosis" 4 (2016) Hendrix, Miyono M. et al. "Newborn Screening Quality Assurance Program for CFTR Mutation Detection and Gene Sequencing to Identify Cystic Fibrosis" vol. 4, 2016 Export RIS Citation Information.

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Hendrix, Miyono M. ;

Foster, Stephanie L.

2016 Jan-Dec | J Inborn Errors Metab Screen. 4

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All newborn screening laboratories in the United States and many worldwide screen for cystic fibrosis. Most laboratories use a second-tier genotyping ...
Use of Next-Generation Sequencing for Diagnosis of West Nile Virus Infection in Patient Returning to Belgium from Hungary

CITE Title : Use of Next-Generation Sequencing for Diagnosis of West Nile Virus Infection in Patient Returning to Belgium from Hungary Personal Author(s) : Wollants, Elke;Smolders, David;Naesens, Reinout;Bruynseels, Peggy;Lagrou, Katrien;Matthijnssens, Jelle;Van Ranst, Marc; Published Date : December 2018 Source : Emerg Infect Dis. 24(12):2380-2382 URL : https://stacks.cdc.gov/view/cdc/61348 Wollants, Elke et al. (2018). Use of Next-Generation Sequencing for Diagnosis of West Nile Virus Infection in Patient Returning to Belgium from Hungary. 24(12). Wollants, Elke et al. "Use of Next-Generation Sequencing for Diagnosis of West Nile Virus Infection in Patient Returning to Belgium from Hungary" 24, no. 12 (2018) Wollants, Elke et al. "Use of Next-Generation Sequencing for Diagnosis of West Nile Virus Infection in Patient Returning to Belgium from Hungary" vol. 24, no. 12, 2018 Export RIS Citation Information.

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Wollants, Elke ;

Smolders, David

December 2018 | Emerg Infect Dis. 24(12):2380-2382

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An elderly patient in Belgium who became critically ill after returning from Hungary was tested for pathogens using routine diagnostic tests. All resu...
New Viruses in Idiopathic Human Diarrhea Cases, the Netherlands

CITE Title : New Viruses in Idiopathic Human Diarrhea Cases, the Netherlands Personal Author(s) : Smits, Saskia L.;Schapendonk, Claudia M.E.;van Beek, Janko;Vennema, Harry;Schürch, Anita C.;Schipper, Debby;Bodewes, Rogier;Haagmans, Bart L.;Osterhaus, Albert D. M. E.;Koopmans, Marion P.; Published Date : Jul 2014 Source : Emerg Infect Dis. 20(7):1218-1222. URL : https://stacks.cdc.gov/view/cdc/24119 Smits, Saskia L. et al. (2014). New Viruses in Idiopathic Human Diarrhea Cases, the Netherlands. 20(7). Smits, Saskia L. et al. "New Viruses in Idiopathic Human Diarrhea Cases, the Netherlands" 20, no. 7 (2014) Smits, Saskia L. et al. "New Viruses in Idiopathic Human Diarrhea Cases, the Netherlands" vol. 20, no. 7, 2014 Export RIS Citation Information.

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Smits, Saskia L. ;

Schapendonk, Claudia M.E.

Jul 2014 | Emerg Infect Dis. 20(7):1218-1222.

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Emerging viral infections can be identified by using a viral metagenomics approach for clinical human material. Diarrhea samples of patients with unex...
Novel Orthopoxvirus and Lethal Disease in Cat, Europe

CITE Title : Novel Orthopoxvirus and Lethal Disease in Cat, Europe Personal Author(s) : Lanave, Gianvito;Dowgier, Giulia;Decaro, Nicola;Albanese, Francesco;Brogi, Elisa;Parisi, Antonio;Losurdo, Michele;Lavazza, Antonio;Martella, Vito;Buonavoglia, Canio;Elia, Gabriella; Published Date : Sep 2018 Source : Emerg Infect Dis. 24(9):1665-1673. URL : https://stacks.cdc.gov/view/cdc/58619 Lanave, Gianvito et al. (2018). Novel Orthopoxvirus and Lethal Disease in Cat, Europe. 24(9). Lanave, Gianvito et al. "Novel Orthopoxvirus and Lethal Disease in Cat, Europe" 24, no. 9 (2018) Lanave, Gianvito et al. "Novel Orthopoxvirus and Lethal Disease in Cat, Europe" vol. 24, no. 9, 2018 Export RIS Citation Information.

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Lanave, Gianvito ;

Dowgier, Giulia

Sep 2018 | Emerg Infect Dis. 24(9):1665-1673.

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We report detection and full-genome characterization of a novel orthopoxvirus (OPXV) responsible for a fatal infection in a cat. The virus induced ski...
U50: A New Metric for Measuring Assembly Output Based on Non-Overlapping, Target-Specific Contigs

CITE Title : U50: A New Metric for Measuring Assembly Output Based on Non-Overlapping, Target-Specific Contigs Personal Author(s) : Castro, Christina J.;Ng, Terry Fei Fan; Published Date : Apr 18 2017 Source : J Comput Biol. 24(11):1071-1080 URL : https://stacks.cdc.gov/view/cdc/51161 Castro, Christina J. and Ng, Terry Fei Fan (2017). U50: A New Metric for Measuring Assembly Output Based on Non-Overlapping, Target-Specific Contigs. 24(11). Castro, Christina J. and Ng, Terry Fei Fan "U50: A New Metric for Measuring Assembly Output Based on Non-Overlapping, Target-Specific Contigs" 24, no. 11 (2017) Castro, Christina J. and Ng, Terry Fei Fan "U50: A New Metric for Measuring Assembly Output Based on Non-Overlapping, Target-Specific Contigs" vol. 24, no. 11, 2017 Export RIS Citation Information.

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Castro, Christina J. ;

Ng, Terry Fei Fan

Apr 18 2017 | J Comput Biol. 24(11):1071-1080

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Advances in next-generation sequencing technologies enable routine genome sequencing, generating millions of short reads. A crucial step for full geno...
Diagnosing Balamuthia mandrillaris encephalitis with metagenomic deep sequencing

CITE Title : Diagnosing Balamuthia mandrillaris encephalitis with metagenomic deep sequencing Personal Author(s) : Wilson, Michael R.;Shanbhag, Niraj M.;Reid, Michael J.;Singhal, Neel S.;Gelfand, Jeffrey M.;Sample, Hannah A.;Benkli, Barlas;O’Donovan, Brian;Ali, Ibne K.M.;Keating, M. Kelly;Dunnebacke, Thelma H.;Wood, Matthew D.;Bollen, Andrew;DeRisi, Joseph L.; Published Date : 11-2015 Source : Ann Neurol. 78(5):722-730 URL : https://stacks.cdc.gov/view/cdc/42076 Wilson, Michael R. et al. (2015). Diagnosing Balamuthia mandrillaris encephalitis with metagenomic deep sequencing. 78(5). Wilson, Michael R. et al. "Diagnosing Balamuthia mandrillaris encephalitis with metagenomic deep sequencing" 78, no. 5 (2015) Wilson, Michael R. et al. "Diagnosing Balamuthia mandrillaris encephalitis with metagenomic deep sequencing" vol. 78, no. 5, 2015 Export RIS Citation Information.

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Wilson, Michael R. ;

Shanbhag, Niraj M.

11-2015 | Ann Neurol. 78(5):722-730

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ObjectiveIdentification of a particular cause of meningoencephalitis can be challenging due to the myriad bacteria, viruses, fungi, and parasites that...
Protocol for Metagenomic Virus Detection in Clinical Specimens

CITE Title : Protocol for Metagenomic Virus Detection in Clinical Specimens Personal Author(s) : Kohl, Claudia;Brinkmann, Annika;Dabrowski, Piotr W.;Radonić, Aleksandar;Nitsche, Andreas;Kurth, Andreas; Published Date : 2015 Source : Emerg Infect Dis. 21(1):48-57. URL : https://stacks.cdc.gov/view/cdc/26677 Kohl, Claudia et al. (2015). Protocol for Metagenomic Virus Detection in Clinical Specimens. 21(1). Kohl, Claudia et al. "Protocol for Metagenomic Virus Detection in Clinical Specimens" 21, no. 1 (2015) Kohl, Claudia et al. "Protocol for Metagenomic Virus Detection in Clinical Specimens" vol. 21, no. 1, 2015 Export RIS Citation Information.

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Kohl, Claudia ;

Brinkmann, Annika

2015 | Emerg Infect Dis. 21(1):48-57.

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Sixty percent of emerging viruses have a zoonotic origin, making transmission from animals a major threat to public health. Prompt identification and ...
Multiplex PCR−Based Next-Generation Sequencing and Global Diversity of Seoul Virus in Humans and Rats

CITE Title : Multiplex PCR−Based Next-Generation Sequencing and Global Diversity of Seoul Virus in Humans and Rats Personal Author(s) : Kim, Won-Keun;No, Jin Sun;Lee, Seung-Ho;Song, Dong Hyun;Lee, Daesang;Kim, Jeong-Ah;Gu, Se Hun;Park, Sunhye;Jeong, Seong Tae;Kim, Heung-Chul;Klein, Terry A.;Wiley, Michael R.;Palacios, Gustavo;Song, Jin-Won; Published Date : Feb 2018 Source : Emerg Infect Dis. 24(2):249-257. URL : https://stacks.cdc.gov/view/cdc/51389 Kim, Won-Keun et al. (2018). Multiplex PCR−Based Next-Generation Sequencing and Global Diversity of Seoul Virus in Humans and Rats. 24(2). Kim, Won-Keun et al. "Multiplex PCR−Based Next-Generation Sequencing and Global Diversity of Seoul Virus in Humans and Rats" 24, no. 2 (2018) Kim, Won-Keun et al. "Multiplex PCR−Based Next-Generation Sequencing and Global Diversity of Seoul Virus in Humans and Rats" vol. 24, no. 2, 2018 Export RIS Citation Information.

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Kim, Won-Keun ;

No, Jin Sun

Feb 2018 | Emerg Infect Dis. 24(2):249-257.

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Seoul virus (SEOV) poses a worldwide public health threat. This virus, which is harbored by Rattus norvegicus and R. rattus rats, is the causative age...
Nipah Virus Sequences from Humans and Bats during Nipah Outbreak, Kerala, India, 2018

CITE Title : Nipah Virus Sequences from Humans and Bats during Nipah Outbreak, Kerala, India, 2018 Personal Author(s) : Yadav, Pragya D.;Shete, Anita M.;Kumar, G. Arun;Sarkale, Prasad;Sahay, Rima R.;Radhakrishnan, Chandni;Lakra, Rajen;Pardeshi, Prachi;Gupta, Nivedita;Gangakhedkar, Raman R.;Rajendran, V.R.;Sadanandan, Rajeev;Mourya, Devendra T.; Published Date : May 2019 Source : Emerg Infect Dis. 25(5):1003-1006 URL : https://stacks.cdc.gov/view/cdc/79346 Yadav, Pragya D. et al. (2019). Nipah Virus Sequences from Humans and Bats during Nipah Outbreak, Kerala, India, 2018. 25(5). Yadav, Pragya D. et al. "Nipah Virus Sequences from Humans and Bats during Nipah Outbreak, Kerala, India, 2018" 25, no. 5 (2019) Yadav, Pragya D. et al. "Nipah Virus Sequences from Humans and Bats during Nipah Outbreak, Kerala, India, 2018" vol. 25, no. 5, 2019 Export RIS Citation Information.

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Yadav, Pragya D. ;

Shete, Anita M.

May 2019 | Emerg Infect Dis. 25(5):1003-1006

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We retrieved Nipah virus (NiV) sequences from 4 human and 3 fruit bat (Pteropus medius) samples from a 2018 outbreak in Kerala, India. Phylogenetic an...
Added Value of Next-Generation Sequencing for Multilocus Sequence Typing Analysis of a Pneumocystis jirovecii Pneumonia Outbreak1

CITE Title : Added Value of Next-Generation Sequencing for Multilocus Sequence Typing Analysis of a Pneumocystis jirovecii Pneumonia Outbreak1 Personal Author(s) : Charpentier, Elena;Garnaud, Cécile;Wintenberger, Claire;Bailly, Sébastien;Murat, Jean-Benjamin;Rendu, John;Pavese, Patricia;Drouet, Thibault;Augier, Caroline;Malvezzi, Paolo;Thiébaut-Bertrand, Anne;Mallaret, Marie-Reine;Epaulard, Olivier;Cornet, Muriel;Larrat, Sylvie;Maubon, Danièle; Published Date : Aug 2017 Source : Emerg Infect Dis. 23(8):1237-1245. URL : https://stacks.cdc.gov/view/cdc/47384 Charpentier, Elena et al. (2017). Added Value of Next-Generation Sequencing for Multilocus Sequence Typing Analysis of a Pneumocystis jirovecii Pneumonia Outbreak1. 23(8). Charpentier, Elena et al. "Added Value of Next-Generation Sequencing for Multilocus Sequence Typing Analysis of a Pneumocystis jirovecii Pneumonia Outbreak1" 23, no. 8 (2017) Charpentier, Elena et al. "Added Value of Next-Generation Sequencing for Multilocus Sequence Typing Analysis of a Pneumocystis jirovecii Pneumonia Outbreak1" vol. 23, no. 8, 2017 Export RIS Citation Information.

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Charpentier, Elena ;

Garnaud, Cécile

Aug 2017 | Emerg Infect Dis. 23(8):1237-1245.

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Pneumocystis jirovecii is a major threat for immunocompromised patients, and clusters of pneumocystis pneumonia (PCP) have been increasingly described...
Divergent Astrovirus Associated with Neurologic Disease in Cattle

CITE Title : Divergent Astrovirus Associated with Neurologic Disease in Cattle Personal Author(s) : Li, Linlin;Diab, Santiago;McGraw, Sabrina;Barr, Bradd;Traslavina, Ryan;Higgins, Robert;Talbot, Tom;Blanchard, Pat;Rimoldi, Guillermo;Fahsbender, Elizabeth;Page, Brady;Phan, Tung Gia;Wang, Chunlin;Deng, Xutao;Pesavento, Patricia;Delwart, Eric; Published Date : 2013 Source : Emerg Infect Dis. 19(9):1385-1392. URL : https://stacks.cdc.gov/view/cdc/20908 Li, Linlin et al. (2013). Divergent Astrovirus Associated with Neurologic Disease in Cattle. 19(9). Li, Linlin et al. "Divergent Astrovirus Associated with Neurologic Disease in Cattle" 19, no. 9 (2013) Li, Linlin et al. "Divergent Astrovirus Associated with Neurologic Disease in Cattle" vol. 19, no. 9, 2013 Export RIS Citation Information.

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Li, Linlin ;

Diab, Santiago

2013 | Emerg Infect Dis. 19(9):1385-1392.

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Using viral metagenomics of brain tissue from a young adult crossbreed steer with acute onset of neurologic disease, we sequenced the complete genome ...
Rapid Inactivation of Non-Endospore-Forming Bacterial Pathogens by Heat Stabilization is Compatible with Downstream Next-Generation Sequencing

CITE Title : Rapid Inactivation of Non-Endospore-Forming Bacterial Pathogens by Heat Stabilization is Compatible with Downstream Next-Generation Sequencing Personal Author(s) : Schroeder, Max R.;Loparev, Vladimir; Published Date : 9 01 2019 Source : Appl Biosaf. 24(3):129-133 URL : https://stacks.cdc.gov/view/cdc/120411 Schroeder, Max R. and Loparev, Vladimir (2019). Rapid Inactivation of Non-Endospore-Forming Bacterial Pathogens by Heat Stabilization is Compatible with Downstream Next-Generation Sequencing. 24(3). Schroeder, Max R. and Loparev, Vladimir "Rapid Inactivation of Non-Endospore-Forming Bacterial Pathogens by Heat Stabilization is Compatible with Downstream Next-Generation Sequencing" 24, no. 3 (2019) Schroeder, Max R. and Loparev, Vladimir "Rapid Inactivation of Non-Endospore-Forming Bacterial Pathogens by Heat Stabilization is Compatible with Downstream Next-Generation Sequencing" vol. 24, no. 3, 2019 Export RIS Citation Information.

:

Schroeder, Max R. ;

Loparev, Vladimir

9 01 2019 | Appl Biosaf. 24(3):129-133

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Introduction:Heat stabilization treatment preserves the in vivo state of biological samples by rapidly inactivating enzymes that cause degradation of ...