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Developing a manually annotated clinical document corpus to identify phenotypic information for inflammatory bowel disease

CITE Title : Developing a manually annotated clinical document corpus to identify phenotypic information for inflammatory bowel disease Personal Author(s) : South, Brett R;Shen, Shuying;Jones, Makoto;Garvin, Jennifer;Samore, Matthew H;Chapman, Wendy W;Gundlapalli, Adi V; Published Date : Sep 17 2009 Source : BMC Bioinformatics. 2009; 10(Suppl 9):S12. URL : https://stacks.cdc.gov/view/cdc/22940 South, Brett R et al. (2009). Developing a manually annotated clinical document corpus to identify phenotypic information for inflammatory bowel disease. 10 South, Brett R et al. "Developing a manually annotated clinical document corpus to identify phenotypic information for inflammatory bowel disease" 10 (2009) South, Brett R et al. "Developing a manually annotated clinical document corpus to identify phenotypic information for inflammatory bowel disease" vol. 10, 2009 Export RIS Citation Information.

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South, Brett R ;

Shen, Shuying

Sep 17 2009 | BMC Bioinformatics. 2009; 10(Suppl 9):S12.

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BackgroundNatural Language Processing (NLP) systems can be used for specific Information Extraction (IE) tasks such as extracting phenotypic data from...
A weighted accumulation test for associating rare genetic variation with quantitative phenotypes

CITE Title : A weighted accumulation test for associating rare genetic variation with quantitative phenotypes Personal Author(s) : Xing, Chuanhua;Satten, Glen A;Allen, Andrew S; Published Date : Nov 29 2011 Source : BMC Proc. 2011; 5(Suppl 9):S6. URL : https://stacks.cdc.gov/view/cdc/8012 Xing, Chuanhua et al. (2011). A weighted accumulation test for associating rare genetic variation with quantitative phenotypes. 5 Xing, Chuanhua and Satten, Glen A and Allen, Andrew S "A weighted accumulation test for associating rare genetic variation with quantitative phenotypes" 5 (2011) Xing, Chuanhua et al. "A weighted accumulation test for associating rare genetic variation with quantitative phenotypes" vol. 5, 2011 Export RIS Citation Information.

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Xing, Chuanhua ;

Satten, Glen A

Nov 29 2011 | BMC Proc. 2011; 5(Suppl 9):S6.

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Currently there is a great deal of interest in developing methods for testing the role that rare variation plays in disease development. Here we propo...
Efficient error correction for next-generation sequencing of viral amplicons

CITE Title : Efficient error correction for next-generation sequencing of viral amplicons Personal Author(s) : Skums, Pavel;Dimitrova, Zoya;Campo, David S;Vaughan, Gilberto;Rossi, Livia;Forbi, Joseph C;Yokosawa, Jonny;Zelikovsky, Alex;Khudyakov, Yury; Published Date : Jun 25 2012 Source : BMC Bioinformatics. 2012; 13(Suppl 10):S6. URL : https://stacks.cdc.gov/view/cdc/10839 Skums, Pavel et al. (2012). Efficient error correction for next-generation sequencing of viral amplicons. 13 Skums, Pavel et al. "Efficient error correction for next-generation sequencing of viral amplicons" 13 (2012) Skums, Pavel et al. "Efficient error correction for next-generation sequencing of viral amplicons" vol. 13, 2012 Export RIS Citation Information.

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Skums, Pavel ;

Dimitrova, Zoya

Jun 25 2012 | BMC Bioinformatics. 2012; 13(Suppl 10):S6.

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BackgroundNext-generation sequencing allows the analysis of an unprecedented number of viral sequence variants from infected patients, presenting a no...
Comparing a knowledge-driven approach to a supervised machine learning approach in large-scale extraction of drug-side effect relationships from free-text biomedical literature

CITE Title : Comparing a knowledge-driven approach to a supervised machine learning approach in large-scale extraction of drug-side effect relationships from free-text biomedical literature Personal Author(s) : Xu, Rong;Wang, QuanQiu; Published Date : Mar 18 2015 Source : BMC Bioinformatics. 2015; 16(Suppl 5):S6. URL : https://stacks.cdc.gov/view/cdc/32362 Xu, Rong and Wang, QuanQiu (2015). Comparing a knowledge-driven approach to a supervised machine learning approach in large-scale extraction of drug-side effect relationships from free-text biomedical literature. 16 Xu, Rong and Wang, QuanQiu "Comparing a knowledge-driven approach to a supervised machine learning approach in large-scale extraction of drug-side effect relationships from free-text biomedical literature" 16 (2015) Xu, Rong and Wang, QuanQiu "Comparing a knowledge-driven approach to a supervised machine learning approach in large-scale extraction of drug-side effect relationships from free-text biomedical literature" vol. 16, 2015 Export RIS Citation Information.

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Xu, Rong ;

Wang, QuanQiu

Mar 18 2015 | BMC Bioinformatics. 2015; 16(Suppl 5):S6.

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BackgroundSystems approaches to studying drug-side-effect (drug-SE) associations are emerging as an active research area for both drug target discover...
Genetic Analysis Workshop 18: Methods and strategies for analyzing human sequence and phenotype data in members of extended pedigrees

CITE Title : Genetic Analysis Workshop 18: Methods and strategies for analyzing human sequence and phenotype data in members of extended pedigrees Personal Author(s) : Bickeböller, Heike;Bailey, Julia N;Beyene, Joseph;Cantor, Rita M;Cordell, Heather J;Culverhouse, Robert C;Engelman, Corinne D;Fardo, David W;Ghosh, Saurabh;König, Inke R;Lorenzo Bermejo, Justo;Melton, Phillip E;Santorico, Stephanie A;Satten, Glen A;Sun, Lei;Tintle, Nathan L;Ziegler, Andreas;MacCluer, Jean W;Almasy, Laura; Published Date : Jun 17 2014 Source : BMC Proc. 2014; 8(Suppl 1):S1. URL : https://stacks.cdc.gov/view/cdc/24865 Bickeböller, Heike et al. (2014). Genetic Analysis Workshop 18: Methods and strategies for analyzing human sequence and phenotype data in members of extended pedigrees. 8 Bickeböller, Heike et al. "Genetic Analysis Workshop 18: Methods and strategies for analyzing human sequence and phenotype data in members of extended pedigrees" 8 (2014) Bickeböller, Heike et al. "Genetic Analysis Workshop 18: Methods and strategies for analyzing human sequence and phenotype data in members of extended pedigrees" vol. 8, 2014 Export RIS Citation Information.

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Bickeböller, Heike ;

Bailey, Julia N

Jun 17 2014 | BMC Proc. 2014; 8(Suppl 1):S1.

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Genetic Analysis Workshop 18 provided a platform for developing and evaluating statistical methods to analyze whole-genome sequence data from a pedigr...