Rapid Identification of Emerging Pathogens: Coronavirus

Details

• Alternative Title:
  Emerg Infect Dis
• Personal Author:
  Sampath, Rangarajan ; Hofstadler, Steven A. ; Blyn, Lawrence B. ; Eshoo, Mark W. ; Hall, Thomas A. ; Massire, Christian ; Levene, Harold M. ; Hannis, James C. ; Harrell, Patina M. ; Neuman, Benjamin ; Buchmeier, Michael J. ; Jiang, Yun ; Ranken, Raymond ; Drader, Jared J. ; Samant, Vivek ; Griffey, Richard H. ; McNeil, John A. ; Crooke, Stanley T. ; Ecker, David J.
• Description:
  We describe a new approach for infectious disease surveillance that facilitates rapid identification of known and emerging pathogens. The process uses broad-range polymerase chain reaction (PCR) to amplify nucleic acid targets from large groupings of organisms, electrospray ionization mass spectrometry for accurate mass measurements of PCR products, and base composition signature analysis to identify organisms in a sample. We demonstrate this principle by using 14 isolates of 9 diverse Coronavirus spp., including the severe acute respiratory syndrome-associated coronavirus (SARS-CoV). We show that this method could identify and distinguish between SARS and other known CoV, including the human CoV 229E and OC43, individually and in a mixture of all 3 human viruses. The sensitivity of detection, measured by using titered SARS-CoV spiked into human serum, was approximate, equals1 PFU/mL. This approach, applicable to the surveillance of bacterial, viral, fungal, or protozoal pathogens, is capable of automated analysis of >900 PCR reactions per day.
• Subjects:
  Animals Base Sequence Communicable Diseases, Emerging Coronaviridae Coronaviridae Infections Emerging Pathogens ESI Mass Spectrometry Humans Infectious Disease Surveillance Molecular Epidemiology PCR Polymerase Chain Reaction Population Surveillance Research RNA, Viral SARS Virus Sensitivity And Specificity Spectrometry, Mass, Electrospray Ionization

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• Source:
  Emerg Infect Dis. 11(3):373-379.
• Document Type:
  Journal Article
• Volume:
  11
• Issue:
  3
• Collection(s):
  Emerging Infectious Diseases
• Main Document Checksum:
  urn:sha256:9d0540282d80c4af378cb9972318c729aacb2934aaab7ea883c742e57f28e968
• Download URL:
  https://stacks.cdc.gov/view/cdc/15652/cdc_15652_DS1.pdf
• File Type:
  [PDF - 333.50 KB ]