Impact of long-term storage of clinical samples collected from 1996 to 2017 on RT-PCR detection of norovirus

Details

• Alternative Title:
  J Virol Methods
• Personal Author:
  Cannon, Jennifer L. ; Baker, Marian ; Barclay, Leslie ; Vinjé, Jan
• Description:
  Noroviruses are recognized as the leading cause of acute gastroenteritis globally. With improved molecular diagnostics developed over the last two decades, archived clinical specimens are increasingly used to investigate the historic prevalence and molecular epidemiology of human norovirus. Yet the impact of long-term storage on viral integrity in clinical specimens has not been evaluated. In this study, we retested 994 stool specimens collected between 1996 and 2017 that originally tested norovirus-positive to quantify the loss of norovirus RT-PCR positivity with increasing sample storage time at 4 °C. In all, 79% of samples tested positive after retesting, but there was an approximate 3% decline in the positivity ratio and 4% decline in the percentage of samples that could be genotyped with each additional year of sample storage. For samples that were originally quantified by real-time RT-PCR (collected between 2003 and 2017), there was an estimated 1-log loss of viral titer occurring every 7 years of sample storage. Few samples contained PCR inhibitors, assessed using a MS2 extraction control, indicating that loss of RT-PCR signal was due primarily to loss of viral RNA integrity after long-term storage of stool samples at 4 °C. Our results indicate that norovirus positive stool samples can be stored with minimal loss in RT-PCR positivity when stored less than a decade. Longer periods of storage may impair norovirus detection, potentially impacting historic estimates of norovirus prevalence and molecular epidemiology if derived by testing archival clinical specimens.
• Subjects:
  Archival Article Caliciviridae Infections Clinical Cold Temperature Feces Genotype Humans Norovirus RNA, Viral RT-PCR Specimen Handling Stool Storage Surveillance Time Factors

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• Source:
  J Virol Methods. 267:35-41
• Pubmed ID:
  30735688
• Pubmed Central ID:
  PMC8981268
• Document Type:
  Journal Article
• Funding:
  CC999999/ImCDC/Intramural CDC HHSUnited States/
• Volume:
  267
• Collection(s):
  CDC Public Access
• Main Document Checksum:
  urn:sha256:5d7c4264fe3f1afdaa691e0e2924d94ffaac619deddabe7eb508b7d10e9df747
• Download URL:
  https://stacks.cdc.gov/view/cdc/116022/cdc_116022_DS1.pdf
• File Type:
  [PDF - 962.02 KB ]