Rapid Detection, Complete Genome Sequencing, and Phylogenetic Analysis of Porcine Deltacoronavirus

Marthaler, Douglas; Raymond, Lindsey; Jiang, Yin; Collins, James; Rossow, Kurt; Rovira, Albert

doi:10.3201/eid2008.140526

i

Rapid Detection, Complete Genome Sequencing, and Phylogenetic Analysis of Porcine Deltacoronavirus

Supporting Files Public Domain

Aug 2014
By Marthaler, Douglas ; Raymond, Lindsey ; Jiang, Yin ; ...

File Language:

English

Details

Alternative Title:

Emerg Infect Dis
Personal Author:

Marthaler, Douglas ; Raymond, Lindsey ; Jiang, Yin ; Collins, James ; Rossow, Kurt ; Rovira, Albert
Description:

In February 2014, porcine deltacoronavirus (PDCoV) was identified in the United States. We developed a PDCoV real-time reverse transcription PCR that identified PDCoV in 30% of samples tested. Four additional PDCoV genomes from the United States were sequenced; these had ≈99%-100% nt similarity to the other US PDCoV strains.
Subjects:

Animals Coronaviridae Coronaviridae Infections Dispatch Expedited Genetic Variation Genome, Viral Open Reading Frames Phylogeny Swine
Source:

Emerg Infect Dis. 20(8):1347-1350.
Document Type:

Journal Article
Place as Subject:

United States
Location:

North America
Volume:

20
Issue:

8
Collection(s):

Emerging Infectious Diseases
Main Document Checksum:

urn:sha256:ba0854c6bb9fcf77e697bcd8f73d424f14ab43c69974ef2548dfcbefd7255f96
Download URL:

https://stacks.cdc.gov/view/cdc/24515/cdc_24515_DS1.pdf
File Type:

[PDF - 397.20 KB ]

File Language:

English

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