Additional file 1: of Dysbiosis, inflammation, and response to treatment: a longitudinal study of pediatric subjects with newly diagnosed inflammatory bowel disease

Bertha, Madeline; Chopra, Pankaj; Hofmekler, Tatyana; Kostic, Aleksandar D.; Kugathasan, Subra; Kumar, Archana; Mulle, Jennifer G.; Prince, Jarod; Satten, Glen A.; Sauer, Cary; Shaw, Kelly A.; Srivatsa, Abhiram; Vatanen, Tommi; Xavier, Ramnik J.; Zwick, Michael E.

doi:10.6084/m9.figshare.c.3598127_d1

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Additional file 1: of Dysbiosis, inflammation, and response to treatment: a longitudinal study of pediatric subjects with newly diagnosed inflammatory bowel disease

2016
See Associated Publication(s)
By Bertha, Madeline ; Chopra, Pankaj ; Hofmekler, Tatyana ; ...

Details:

Alternative Title:

figshare Academic Research System
Journal Article:

Genome Medicine
Personal Author:

Bertha, Madeline ; Chopra, Pankaj ; Hofmekler, Tatyana ; Kostic, Aleksandar D. ; Kugathasan, Subra ; ... More +

Bertha, Madeline ; Chopra, Pankaj ; Hofmekler, Tatyana ; Kostic, Aleksandar D. ; Kugathasan, Subra ; Kumar, Archana ; Mulle, Jennifer G. ; Prince, Jarod ; Satten, Glen A. ; Sauer, Cary ; Shaw, Kelly A. ; Srivatsa, Abhiram ; Vatanen, Tommi ; Xavier, Ramnik J. ; Zwick, Michael E. Less -
Corporate Authors:

Aalto University School of Science, Department of Computer Science ; Broad Institute of MIT and Harvard ; Centers for Disease Control and Prevention ; Department of Human Genetics, Emory University School of Medicine ; Division of Reproductive Health, Centers for Disease Control and Prevention ; ... More +

Aalto University School of Science, Department of Computer Science ; Broad Institute of MIT and Harvard ; Centers for Disease Control and Prevention ; Department of Human Genetics, Emory University School of Medicine ; Division of Reproductive Health, Centers for Disease Control and Prevention ; Emory University School of Medicine and Children's Healthcare of Atlanta, Department of Pediatrics ; Emory University, Department of Epidemiology, Rollins School of Public Health ; Emory University, Department of Human Genetics ; Emory University, Graduate Program in Genetics and Molecular Biology, Graduate Division of Biological and Biomedical Sciences ; Massachusetts General Hospital and Harvard Medical School, Center for Computational and Integrative Biology Less -
Description:

Microbiome samples sequencing and analysis summary. Contains a table that summarizes total reads, reads passing QC, and reads successfully classified under closed and de novo OTU-picking approaches for each sample. Also provided are the dysbiosis and Shannon index values for samples under the aforementioned approaches along with median values after 10,000 rarefactions (subsamplings) of the closed-reference.biom table. (XLSX 46 kb)
Content Notes:

Stacks:41544
Keywords:

[+]

59999 Environmental Sciences Not Elsewhere Classified 69999 Biological Sciences Not Elsewhere Classified Biotechnology Ecology FOS: Biological Sciences FOS: Clinical Medicine FOS: Earth And Related Environmental Sciences Immunology Microbiology Space Science
DOI:

https://dx.doi.org/10.6084/m9.figshare.c.3598127_d1
Landing Page:

https://figshare.com/articles/Additional_file_1_of_Dysbiosis_inflammation_and_response_to_treatment_a_longitudinal_study_of_pediatric_subjects_with_newly_diagnosed_inflammatory_bowel_disease/4324208
Modified:

12/14/2016
Date Issued:

01/01/2016
Document Type:

Dataset
Funding:

Burroughs Wellcome Fund(1008188:NA;100000861:SCIVAL;) ; Marcus Foundation(DK098231:NA;DK087694:NA;) ; National Institute of Diabetes and Digestive and Kidney Diseases(100000062:SCIVAL;R01DK098231:NA;P30DK043351:NA;F31DK107229:NA;R01DK087694:NA;) ; National Institutes of Health(100000002:SCIVAL;) ; NIH NRSA

Burroughs Wellcome Fund(1008188:NA;100000861:SCIVAL;) ; Marcus Foundation(DK098231:NA;DK087694:NA;) ; National Institute of Diabetes and Digestive and Kidney Diseases(100000062:SCIVAL;R01DK098231:NA;P30DK043351:NA;F31DK107229:NA;R01DK087694:NA;) ; National Institutes of Health(100000002:SCIVAL;) ; NIH NRSA Less -
CIO:

NCCDPHP
Collection(s):

Stephen B. Thacker CDC Library collection
Main Document Checksum:

[+]

urn:sha256:e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855

English

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Dysbiosis, inflammation, and response to treatment: a longitudinal study of pediatric subjects with newly diagnosed inflammatory bowel disease

[PDF - 1.68 MB]

Personal Author:

Shaw, Kelly A. ;

Bertha, Madeline
...

Jul 13 2016 | Genome Med. 8.

Description:

BackgroundGut microbiome dysbiosis has been demonstrated in subjects with newly diagnosed and chronic inflammatory bowel disease (IBD). In this study ...

File Type:

[PDF - 1.68 MB]

File Type:

[PDF - 1.68 MB]

Additional file 1: of Dysbiosis, inflammation, and response to treatment: a longitudinal study of pediatric subjects with newly diagnosed inflammatory bowel disease

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