High-Quality Genome Assembly and Annotation for Plasmodium coatneyi, Generated Using Single-Molecule Real-Time PacBio Technology

Chien, Jung-Ting; Pakala, Suman B.; Geraldo, Juliana A.; Lapp, Stacey A.; Humphrey, Jay C.; Barnwell, John W.; Kissinger, Jessica C.; Galinski, Mary R.

doi:10.1128/genomeA.00883-16

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High-Quality Genome Assembly and Annotation for Plasmodium coatneyi, Generated Using Single-Molecule Real-Time PacBio Technology

Sep 01 2016
By Chien, Jung-Ting ; Pakala, Suman B. ; Geraldo, Juliana A. ; ...
http://dx.doi.org/10.1128/genomeA.00883-16
Source: Genome Announc. 2016; 4(5).

[PDF-153.62 KB]

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Details:

Alternative Title:

Genome Announc
Personal Author:

Chien, Jung-Ting ; Pakala, Suman B. ; Geraldo, Juliana A. ; Lapp, Stacey A. ; Humphrey, Jay C. ; ... More +

Chien, Jung-Ting ; Pakala, Suman B. ; Geraldo, Juliana A. ; Lapp, Stacey A. ; Humphrey, Jay C. ; Barnwell, John W. ; Kissinger, Jessica C. ; Galinski, Mary R. Less -
Description:

Plasmodium coatneyi is a protozoan parasite species that causes simian malaria and is an excellent model for studying disease caused by the human malaria parasite, P. falciparum Here we report the complete (nontelomeric) genome sequence of P. coatneyi Hackeri generated by the application of only Pacific Biosciences RS II (PacBio RS II) single-molecule real-time (SMRT) high-resolution sequence technology and assembly using the Hierarchical Genome Assembly Process (HGAP). This is the first Plasmodium genome sequence reported to use only PacBio technology. This approach has proven to be superior to short-read only approaches for this species.
Subjects:

[+]

Eukaryotes
Source:

Genome Announc. 2016; 4(5).
Pubmed ID:

27587810
Pubmed Central ID:

PMC5009967
Document Type:

Journal Article
Collection(s):

CDC Public Access
Main Document Checksum:

[+]

urn:sha256:2b19f78fc02f3e1d92806b27eeaaeeca053aaf168f307cc7830bb101c1e0ed1c
Download URL:

https://stacks.cdc.gov/view/cdc/41377/cdc_41377_DS1.pdf
File Type:

e00883-16.nxml

bin

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