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Sepia, a taxonomy oriented read classifier in Rust

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File Language:
English


Details

  • Alternative Title:
    J Open Source Softw
  • Personal Author:
  • Description:
    Here we present Sepia, a fast and accurate read classifier. It is implemented in Rust, has the ability to switch between different taxonomies, can detect inconsistencies in taxonomies, and can estimate similarities between organisms in a query dataset and reference sequences in the index.
  • Source:
    J Open Source Softw. 6(68)
  • Pubmed ID:
    39233879
  • Pubmed Central ID:
    PMC11373485
  • Document Type:
    Journal Article
  • Funding:
    CC999999/ImCDC/Intramural CDC HHSUnited States/
  • Volume:
    6
  • Issue:
    68
  • Collection(s):
  • Main Document Checksum:
    urn:sha-512:35ecfee324146ac9a520ae2f06cc4e3ac382bf7281a5ee53f4f6e5230dabe64f0608fc45de70a8dfc6b35887384d168f91c2d7a823336e1c09a3448970844517
  • Download URL:
  • File Type:
    Filetype[PDF - 145.77 KB ]
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