Sepia, a taxonomy oriented read classifier in Rust

den Bakker, Henk C.; Katz, Lee S.

doi:10.21105/joss.03839

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Sepia, a taxonomy oriented read classifier in Rust

2021
By den Bakker, Henk C. ; Katz, Lee S.
http://dx.doi.org/10.21105/joss.03839
Source: J Open Source Softw. 6(68)

[PDF-145.77 KB]

English

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Details:

Alternative Title:

J Open Source Softw
Personal Author:

den Bakker, Henk C. ; Katz, Lee S.

den Bakker, Henk C. ; Katz, Lee S. Less -
Description:

Here we present Sepia, a fast and accurate read classifier. It is implemented in Rust, has the ability to switch between different taxonomies, can detect inconsistencies in taxonomies, and can estimate similarities between organisms in a query dataset and reference sequences in the index.
Source:

J Open Source Softw. 6(68)
Pubmed ID:

39233879
Pubmed Central ID:

PMC11373485
Document Type:

Journal Article
Funding:

CC999999/ImCDC/Intramural CDC HHSUnited States/
Volume:

6
Issue:

68
Collection(s):

CDC Public Access
Main Document Checksum:

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urn:sha-512:35ecfee324146ac9a520ae2f06cc4e3ac382bf7281a5ee53f4f6e5230dabe64f0608fc45de70a8dfc6b35887384d168f91c2d7a823336e1c09a3448970844517
Download URL:

https://stacks.cdc.gov/view/cdc/162222/cdc_162222_DS1.pdf
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