<!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Archiving and Interchange DTD v1.0 20120330//EN" "JATS-archivearticle1.dtd">
<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" article-type="abstract"><?properties open_access?><front><journal-meta><journal-id journal-id-type="nlm-ta">Online J Public Health Inform</journal-id><journal-id journal-id-type="iso-abbrev">Online J Public Health Inform</journal-id><journal-id journal-id-type="publisher-id">OJPHI</journal-id><journal-title-group><journal-title>Online Journal of Public Health Informatics</journal-title></journal-title-group><issn pub-type="epub">1947-2579</issn><publisher><publisher-name>University of Illinois at Chicago Library</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmc">6088065</article-id><article-id pub-id-type="publisher-id">ojphi-10-e48</article-id><article-id pub-id-type="doi">10.5210/ojphi.v10i1.8369</article-id><article-categories><subj-group subj-group-type="heading"><subject>ISDS 2018 Conference Abstracts</subject></subj-group></article-categories><title-group><article-title>Improving the Quality of Data Exchange Formats in the U.S. National Tuberculosis
Surveillance System</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Bonney</surname><given-names>Wilfred</given-names></name><xref ref-type="corresp" rid="cor1">*</xref><xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref><xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref></contrib><contrib contrib-type="author"><name><surname>Price</surname><given-names>Sandy F.</given-names></name><xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref></contrib><contrib contrib-type="author"><name><surname>Miramontes</surname><given-names>Roque</given-names></name><xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref></contrib><aff id="aff1"><label>1</label>Data Management, Statistics and Evaluation Branch, Division of
Tuberculosis Elimination, National Center for HIV/AIDS, Viral Hepatitis, STD, and TB Prevention,
Office of Infectious Diseases, <institution>Centers for Disease Control and
Prevention</institution>, <addr-line>Atlanta, GA</addr-line>, <country>USA</country>;</aff><aff id="aff2"><label>2</label>Public Health Informatics Fellowship Program, Division of Scientific
Education and Professional Development, Center for Surveillance, Epidemiology, and Laboratory
Services, <institution>Centers for Disease Control and Prevention</institution>, <addr-line>Atlanta,
GA</addr-line>, <country>USA</country></aff></contrib-group><author-notes><corresp id="cor1"><label>*</label>Wilfred Bonney E-mail: <email xlink:href="nto5@cdc.gov">nto5@cdc.gov</email></corresp></author-notes><pub-date pub-type="epub"><day>30</day><month>5</month><year>2018</year></pub-date><pub-date pub-type="collection"><year>2018</year></pub-date><volume>10</volume><issue>1</issue><elocation-id>e48</elocation-id><permissions><copyright-year>2018</copyright-year></permissions><kwd-group kwd-group-type="author"><title>Keywords </title><kwd>Tuberculosis</kwd><kwd>Exchange formats</kwd><kwd>Surveillance system</kwd><kwd>LOINC</kwd><kwd>SNOMED CT</kwd></kwd-group></article-meta></front><body><sec><title>Objective</title><p>The objective of this presentation is to use a congruence of standardization protocols to
effectively ensure that the quality of the data elements and exchange formats within the NTSS are
optimal for users of the system.</p></sec><sec sec-type="intro"><title>Introduction</title><p>Disease surveillance systems remain the best quality systems to rely on when standardized
surveillance systems provide the best data to understand disease occurrence and trends. The United
States National Tuberculosis Surveillance System (NTSS) contains reported tuberculosis (TB) cases
provided by all 50 states, the District of Columbia (DC), New York City, Puerto Rico, and other
U.S.-affiliated jurisdictions in the Pacific Ocean and Caribbean Sea [1]. However, the NTSS
currently captures phenotypic drug susceptibility testing (DST) data and does not have the ability
to collect the rapid molecular DST data generated by platforms such as Cepheid GeneXpert MTB/ RIF,
Hain MTBDRplus and MTBDRsl, Pyrosequencing, and Whole Genome Sequencing [2-6]. Moreover, the
information exchanges within the NTSS (represented in HL7 v2.5.1 [7]) are missing critical segments
for appropriately representing laboratory test results and data on microbiological specimens.</p></sec><sec sec-type="methods"><title>Methods</title><p>The application of the standardization protocols involves: (a) the revision of the current Report
of Verified Case of Tuberculosis (RCVT) form to include the collection of molecular DST data; (b)
the enhancement of the TB Case Notification Message Mapping Guide (MMG) v2.03 [8] to include
segments for appropriately reporting laboratory test results (i.e., using Logical Observation
Identifiers Names and Codes (LOINC) as a recommended vocabulary) and microbiology related test
results (i.e., using Systematized Nomenclature of Medicine -- Clinical Terms (SNOMED CT) as a
recommended vocabulary); and (c) the standardization of the laboratory testing results generated by
the variety of molecular DST platforms, reported to TB health departments through electronic
laboratory results (ELR), using those same standardized LOINC and SNOMED CT vocabularies in HL7
v2.5.1 [7].</p></sec><sec sec-type="results"><title>Results</title><p>The application of the standardization protocols would optimize early detection and reporting of
rifampin-resistant TB cases; provide a high-quality data-driven decision-making process by public
health administrators on TB cases; and generate high-quality datasets to enhance reporting or
analyses of TB surveillance data and drug resistance.</p></sec><sec sec-type="conclusions"><title>Conclusions</title><p>This study demonstrates that it is possible to apply standardized protocols to improve the
quality of data, specifications and exchange formats within the NTSS, thereby streamlining the
seamless exchange of TB incident cases in an integrated public health environment supporting TB
surveillance, informatics, and translational research.</p></sec></body><back><ack><title>Acknowledgments</title><p>The authors acknowledge the support of Centers for Disease Control and Prevention (CDC), Northrop
Grumman, TB controllers and laboratories throughout the USA who report cases to the CDC.</p></ack><ref-list><title>References</title><ref id="r1"><label>1</label><mixed-citation publication-type="web">Centers for Disease Control and Prevention (US), Division of
Tuberculosis Elimination. Reported Tuberculosis in the United States, 2015 [Internet]. 2015 [cited
2017 Sept 19]. Available from <ext-link ext-link-type="uri" xlink:href="https://www.cdc.gov/tb/statistics/reports/2015/default.htm">https://
www.cdc.gov/tb/statistics/reports/2015/default.htm</ext-link></mixed-citation></ref><ref id="r2"><label>2</label><mixed-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Davis</surname><given-names>JL</given-names></name><name><surname>Kawamura</surname><given-names>LM</given-names></name><name><surname>Chaisson</surname><given-names>LH</given-names></name><etal/></person-group>
<year>2014</year>. <article-title>Impact of GeneXpert MTB/RIF on patients and tuberculosis programs
in a low-burden setting. a hypothetical trial</article-title>. <source>Am J Respir Crit Care
Med</source>. <volume>189</volume>(<issue>12</issue>), <fpage>1551</fpage>-<lpage>59</lpage>.
<pub-id pub-id-type="doi">10.1164/rccm.201311-1974OC</pub-id><pub-id pub-id-type="pmid">24869625</pub-id></mixed-citation></ref><ref id="r3"><label>3</label><mixed-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Helb</surname><given-names>D</given-names></name><name><surname>Jones</surname><given-names>M</given-names></name><name><surname>Story</surname><given-names>E</given-names></name><etal/></person-group>
<year>2010</year>. <article-title>Rapid detection of Mycobacterium tuberculosis and rifampin
resistance by use of on-demand, near-patient technology</article-title>. <source>J Clin
Microbiol</source>. <volume>48</volume>(<issue>1</issue>), <fpage>229</fpage>-<lpage>37</lpage>.
<pub-id pub-id-type="doi">10.1128/JCM.01463-09</pub-id><pub-id pub-id-type="pmid">19864480</pub-id></mixed-citation></ref><ref id="r4"><label>4</label><mixed-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Hillemann</surname><given-names>D</given-names></name><name><surname>R&#x000fc;sch-Gerdes</surname><given-names>S</given-names></name><name><surname>Boehme</surname><given-names>C</given-names></name><etal/></person-group>
<year>2011</year>. <article-title>Rapid molecular detection of extrapulmonary tuberculosis by the
automated GeneXpert MTB/RIF system</article-title>. <source>J Clin Microbiol</source>.
<volume>49</volume>(<issue>4</issue>), <fpage>1202</fpage>-<lpage>05</lpage>. <pub-id pub-id-type="doi">10.1128/JCM.02268-10</pub-id><pub-id pub-id-type="pmid">21270230</pub-id></mixed-citation></ref><ref id="r5"><label>5</label><mixed-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Lin</surname><given-names>SYG</given-names></name><name><surname>Desmond</surname><given-names>EP</given-names></name></person-group>.
<year>2014</year>. <article-title>Molecular diagnosis of tuberculosis and drug
resistance</article-title>. <source>Clin Lab Med</source>. <volume>34</volume>(<issue>2</issue>),
<fpage>297</fpage>-<lpage>314</lpage>. <pub-id pub-id-type="doi">10.1016/j.cll.2014.02.005</pub-id><pub-id pub-id-type="pmid">24856529</pub-id></mixed-citation></ref><ref id="r6"><label>6</label><mixed-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Lin</surname><given-names>SYG</given-names></name><name><surname>Rodwell</surname><given-names>TC</given-names></name><name><surname>Victor</surname><given-names>TC</given-names></name><etal/></person-group>
<year>2014</year>. <article-title>Pyrosequencing for rapid detection of extensively drug-resistant
Mycobacterium tuberculosis in clinical isolates and clinical specimens</article-title>. <source>J
Clin Microbiol</source>. <volume>52</volume>(<issue>2</issue>),
<fpage>475</fpage>-<lpage>82</lpage>. <pub-id pub-id-type="doi">10.1128/JCM.01821-13</pub-id><pub-id pub-id-type="pmid">24478476</pub-id></mixed-citation></ref><ref id="r7"><label>7</label><mixed-citation publication-type="web">HL7 International. HL7 Version 2.5.1 Implementation Guide:
Electronic Laboratory Reporting to Public Health, Release 2 (US Realm) [Internet]. 2014 [cited 2017
Sept 19]. Available from <ext-link ext-link-type="uri" xlink:href="https://www.hl7.org/implement/standards/product_brief.cfm?product_">https://
www.hl7.org/implement/standards/product_brief.cfm?product_</ext-link> id=329</mixed-citation></ref><ref id="r8"><label>8</label><mixed-citation publication-type="web">Centers for Disease Control and Prevention (US), Division of
Tuberculosis Elimination. Tuberculosis Case Notification MMG v2.03 [Internet]. 2010 [cited 2017 Sept
18]. Available from <ext-link ext-link-type="uri" xlink:href="https://wwwn.cdc.gov/nndss/case-notification/historical-documentation.html">https://
wwwn.cdc.gov/nndss/case-notification/historical-documentation.html</ext-link></mixed-citation></ref></ref-list></back></article>