SUPPLEMENTARY INFORMATION

Manuscript:

Y. Qvarnstrom and G. Swedberg: Variations in gene organisation and DNA uptake signal sequence in the folP region between commensal and pathogenic Neisseria species.

Intergenic sequences from commensal Neisseriae.

dedA-manB (region DM)

N. cinerea ATCC14685

CACGCCGAAACCGCAGATGACCAATACAAAAAAAACAGCCGCATAACCGTATTCGACAAAAAAGGCTTCTAAAAAAGCAAACATGGCGGATATTCCATTGTCGGAGATAAAAAGTCAGAACAAACCGAAACATTTTCTACATGAAACAGCATTCTATCAAAGATTATGCCGTCTGAAAGCGGAAAAAAGGCAGATTCGCGCATCCTCCGCATGTTCAGACGGCATTTAAACAGAAAACCGGCCGGTTCTGAAAACGGTTTTTCCTGATTTTGCCTAAATGCTGCCGATGGCGGAAGCAATACGTTCCGCCCCTTCGCGCGCCCAATCGGCCTGTCGTGCCTCAACCATCACGCGCACGACGGGTTCAGTTCCCGAAGCGCGCAACACAACCCTTCCTTTGCCTTCGAGTTCTTTTTC

N. lactamica ATCC23970

CACGCCGAAACCGCAGATGACCAAAACGAAAAACACGGCTGCGTAGCCGTATTCGACAAAAAAGGCTTCCAAAAGGGCAAACATAGCGGGTTTTTCCATTGGTCGGAAATAAAAAGTCAGAACAAGCCGAGGCGTTTTCTGCGCGAAACGGCATTCTATCAAAGATTATGCCGTCTGAAAGCGGCAGGGGGCAGATTCGCGTGCCCGCCGCCCGTTCAGACGGCATTTAAACAGAAAACCGCCCGGTTCTGAAAACGGTTTTGCCTGATTTTGCCTAAATGCCGCCGATGGCGGCGGCGATACGTTCCGCCCCGTCGCGCGCCCAATCCGCCTGCCGCGCTTCAACCATCACGCGCACGACCGGTTCGGTTCCCGAAGCGCGCAACACAACCCTTCCTTTGCCTTCGAGTTCTTTTTC

N. sicca ATCC9913

TACGCCAAAGCCGCAGATGACCAAAACGAAAAACACGGCTGCGTAGCCGTATTGGACAAAAAAGGCTTCTAAAAAGGCAAACATGGCGTATCCGTCGGTTGTAATGTGGAGGGGAAATTCATTTGAACTGAATGTCGTATTTTACCAAAGATATGGTCGTCTGAAAGAAATAACAAGGAAGGTTATGAAAATAGGTGTGAACAATATGAATTGATGTGTTTCAGACGACCTCGAATCCTAAAAAACACAGTGGATTAACCTTAAACCGGCATGGCGTTCCTCCACCTTGCCCTGATTCAAAATTAATCCACTGTACCGCCGTTCCCGCTTGCGTGGAAACGACGGCAGTTCCAAGGTTTGCTAAAAACCTATTGATTTTTCGACGGCATTACTGTTTGCCGGTGATGGCTGCTGCGATGCGTTCCGCGCCTTTTTTCGCCCAGTCCGCCTGACGCGCTTCTACCATGACGCGCACGACCGGCTCGGTACCCGATGCGCGCAACACGACGCGGCCTTTGCCTTCGAGTTCTTTTTC

manB -folP (region MF)

N. lactamica ATCC23970

AACTCGACTTCATCGCTCAATTTCACGCCGCCCTCGGCAAAGAATTTGATGCCGTTGTCGGAATAGGCATTGTGCGACGCGGAAATCATCACACCGTCCGGACAAACGCAGCGCACGGGTCAGATAAGCCACGCCGGGCCGTAGGCAGCGGACCGGTTTGGATAACGTTGACACCTGCGGCGGTAAAACCCGCCACCAAAGCGGCCTCCAGCATATAGCCGGAAATCCGCGTATCCTTGCCGATTAAAACAGTCGGTTTCTGGCCGGTGTCGTGCTGAACCAAAACCTGCCCCGCCGCATAGCCGAGTTTAATACAAAATCGGGCGTAATCGGAAACTGCCCGACTTCGCCGCGCACGCCGTCCGTGCCGAAATATTTTTTTGCCATCATTTGCTCCGAGCATGTGAACCGTTGTCCGAGATTATACAGGCAGTTTGTGCCTTGCTGTCTGCACCATTGATGCCGTCTGAAGCCGCCCcGCCCTTTTCAGACGGCATAAAGTATGCGAACCGCTGTTTACAGATTGATGCCCAACGCTTCCCACACCTTCAACGCATCCGCCGTCGCCTTCACATCATGCACCCGCACGATTTGCGCGCCGCGCGCCACGGAAGCCAGCGCCGCCGCCACGCTGCCGTGTACGCgTgcCGCCGCGTCTGCCTCGCCGGTCAGCTCGCCTATCATGCGCTTGCGCGACACGCCGACCAGCAGCGGCAAAcCGGTTTCCGCCATCAATTCGGGCAAATGCCGcATCAGCGCGATATTGTGTTGCAGGGTTTTGCCGAAGCCGAAACCCGGGTCGAGTGTGATG

N. cinerea ATCC14685

AACTCGATTTCATCGGAAAGCTTCACGCCACCCTCGGCAAAGAATTTGATGCCGTTGTCGGAATAGGCATTGTGCGACGCGGAAATCATCACACCGGCGGATAAACGCAGCGCACGGGTCAGATAAGCCACGCCGGGCGTAGGCAGCGGACCGGTTTGGATAACGTTGACACCTGCGGCGGTAAAACCTGCCACCAAAGCGGCTTCCAGCATATAACCGGAAATACGCGTATCCTTGCCGATTAAAACGGTCGGTTTCTGGTCAGTGTCGTGCTGAACCAAAACCTGACCCGCCGCATAGCCGAGTTTAATACAAAATCGGGCGTAATCGGAAACTGCCCGACTTCGCCGCGCACGCCGTCCGTGCCGAAATATTTTTTTGCCATGTGTTGCTCCGAGAATGTGAACCGTTGTCCGAGATTATACAGTCAGTTTGTGCCTTGCTGTCTGCACCGTTGATGCCGTCTGAAGCCGCCCCGTCCTTTTCAGACGGCATGAAGTATGTGAACCGCTGTTTACAGATTGATGCCCAACGCTTCCCACGCCTTCAAAGCATCCGCCGTCGCCTTCACATCATGCACCCGCACAATTTGCGCGCCGCGCGCCACGGAAGCCAGCGCCGCCGCCACGCTGCCGTGTACGCGTGCCGCCGCGTCTGCCTCACCGGTCAGCTCGCCTATCATGCGTTTGCGCGATACGCCGATTAGCAATGGCAAACCGGTTTCCGCCATCAATTCGGGTAAATGCCGCATCAGTGCGATATTGTGTTGTAAGGTTTTGCCGAAGCCGAAACGGGGTCGAGTGTGATG 

N. sicca ATCC9913

AACTCGATTTCNTCGCTCAGTTTCGCCGCCTTCGGCGAAGAATTTGATGCCGTTGTCGGAATATACATTGTGCGACGCGGAAATCATCACGCCGGCGGACAAACGCAGCGCACGGGTCAGATAAGCCACGCCCGGCGTAGGCAGCGGGCCGGTTTGGATGACGTTGACACCCGCGGCGGTAAAACCCGCCACCAGCGCGGCTTCAAGCATGTAGCCGGAAATACGCGTGTCTTTGCCGATAAGGACGGTCGGTTTCTGCCCGCCGTCATGTTGCACCAACACCTGCCCCGCCGCATAACCGAGTTTCAATACGAAATCGGGGGTAATCGGGAATTGACCGACTTCGCCGCGCACGCCGTCTGTGCCGAAATATTTTTTTGCCATGAGTTTACTCCGTGAGGATGTTTAGAATTGGGGTTACCGTAAATGTCATAACGGGCAGTATAGGGAATTTTATGCAAAACTGTTGGGTTTTATGTTTAGCGTTATTAGATTGCGCCTGAGCGGTATAGTTTCTTATCTTATCAAAACCCGAAACAAGTTAACCGGATTAAACAAAAGGGTCGTCTGAAACCGCCAAACTCGTTTTCAGACGACCTCTTTATCACTATTTCAGGGATTGCCGACATTTCATTTTCAAAGTGTTTTTTGTTTGCAAAGCAGAAGCTATTAAATGCCGGTAATGCCTAAGGCGTCCCACACCTTCAACGCATCCGCCGTCGCTTTCACATCATGCACCCGCACAATTTGCGCGCCGCGCGCTACGGACGCCAACGCCGCCGCCACGCTGCCGTGAACACGTTCCGCCGCGTCTGTCTCGCCGGTCAGCTCGCCTATCATGCGTTTGCGCGACACGCCGATGAGCAGCGGAAAACCCGTTTCCGCCATCAATTCGGGCAAATGCCGCATCAGCGCGATATTGTGTTGCAGGGTTTTGCCGAAGCCAAAACCGGGGTCAAGCACGATG

folP - upstream (region FU)

N. sicca ATCC9913

CACGCCGCCATCGGAAAACGAATCGGGCGTCAAGTTGACGATACCCATGATTTTCGGTTTGTCCAAACCAATTTCAAACCTGCCTACCTGCCAGATGCGCGTGGTCATGATGGTGTTCCGTAAAATAATGAAGACGAAATTATAGGTCGTCTGAAAACATCATGCAGCTTTCAGACGACCCCGTTTTACAAATCCTGCCGTTTAATGCCAAAATCAGGTTTACCGTCCTAATCCGCCTGACAAAGGAAGCATCATGTACCAACACGTCGAATACTACCCCGGCGACCCGATTTTGAGTTTG

N. cinerea ATCC14685

CGCGCCGCCGTCGGAAAAAGAATCGGGCGTGAGATTCACGATACCCATGATTTTCGGTTTGTCCAAACCGATTTCAAACCGTCCTGCCTGCCAAACGCATCCGACCATATCCGTGCCTCCGGAATAAAAAGCAAATTATATGCCGTCTGAACAAAACTTGTCCGTTTCAGACGGCATCGGTATTTCAAAAAAGTATCTTGCAGAATCCGCCGCCGTATGAAACATACACTGCCCCTGCAAACGCGGCAACACCCGCGATACCTGATCCGGCGGTATGCCTGCTTATGGACATTACCCCTTTATACAAGATAATCCGCCCGCACAAAATAGGATTTCTACAAGCCGTGTTATACTGTGGCGTGTTTTACAGACTTTTCAGGCTATGGATTTATTATCGGTCTTCCACAAATACCGTCTGAAATATG

N. lactamica ATCC23970

CGCGCCGCCGTCGGAAAAAGAATCGGGCGTGAGATTCACGATGCCCATGATTTTCGGCTTGTCCAAACCGATTTCAAACCGTCCTGCCTGCCAAACGCATCCGACCATATCCGTGCCTCCGGAATAAAAAGCAAATTATATGCCGTCCGAACAAAACTTGTCCGTTTCAGACGGCATCGGCATTTCAAAAAAGCCTCCCGCCAACTCCGCCGCCGTATGAAATATGCCcGCCCCTGCGAACGCGGCAACACCCCTTTATGCAAGATATAGTGGATTAACAAAAATCAGGACAAGGCGACGAAGCCGCAGACAGTACAAATAGTACGGAACCGATTCACTTGGTGCTTGAGCACCTTAGAGAATCGTTCTCTTTGAGCTAAGGCGAGGCAACGCCGTACCGGTTTTTGTTAATCCACTATAATCCGCCCGCATAAAATAGGATTGCCGCAAGCCGTGTTATACTGCGGCGTGTTTTACGGATTGTTCGGGCTATGGATTTATTATCGGTCTTCCACAAATACCGTCTGAAATATG 

tyrB –cyt5 (region TC)

N. cinerea ATCC14685

GCCGGACTGAATGCCTCGAATATCGCCTATGTTGCCGATGCATTTGCCGAAGTATTGAAATAAGAATTTGAAGTAAATCAAAAGGCCGTCTGAAAAATATTTATCTTTCAGACGGCCTCTTTATAATTGGCGCACCCAACAGGGATCGAACCTGTGACCTCCAGCTTCGGAAACTGACACTCTTCCAACTGAGCTATGGGTGCGGAAAACGTAAGATTAACGTAAATTCTGCAAATTGGCAAAGTTTATCTTGAGGCGTCAGGCTGATGCGCGGGGTATGAGGGATATTTGTTTGGGGATAAGCAAGTATTTTCAATGGATTATTTGCTTAAAAGAGACGCTGCCTGTGATTTTTTGCATATTTTCAATGATAGTGATTGGAAAGACCCTGTGAATTCAGTATAATCCAGCAAAATATTGTTAATTGCGTTTAACATACCAAACTATAATTTACAGCACAACCTAACCTGACGGCGAGGCCTACCAAATGAAACAACTCCGCGACAATAAAGCCCAAGGCTCTGCATTGTTCA

N. lactamica ATCC23970

CCGGGCTGAATACGTCGAATACCGGCTATGTTGCCCGCGCATTCGCGGAAGTCTTGAAATAAGAGTTTGAAGTAAGTCAAAAGGCCGTCTGAAAAGTATTTATCTTTCAGACGGCCTCTTTATAATTGGCGCACCCAACAGGGATCGAACCTGTGACCTCCAGCTTCGGAAACTGACACTCTTCCAACTGAGCTATGGGTGCGGAAAACGTAAGGTTAACGTAAATTCTGCAAATTGGCAAAGGTTATCTTGCGCCGGCAGGCGGCGTATGGCGGCGTGAGGGATGTTTCTTGGGAGATAATCCAGTATTTCAACGAATTATTTATTTTATATGGATACCGTTGGCAAATTTTTTCATATTTTCAATGATAGCGATTGGTAAGACCCTGTGAATTCAGTATNCANCCAGCAAAATATTGTTAACTGCGTTTAACACACCAAACTATAATTTACAGCACAACCTAACCTGACGGCGAGGCCTACCAAATGAAACAACTCCGCGACAATAAAGCCCAAGGCTCTGCACTGTTTA

N. sicca ATCC9913

GCCGGACTGAATGCCTCGAATATCGCCTATGTCGCCGATGCGTTTGCCGAAGTGTCGAAATAAAACTCAAAAAACAAACAGATCGTCTGAAACCCGATGTAGTTTTATTTGAAGTAAATCAAAAGGCCGCCCGAAAAATTTTCATCTTTCAGACGGTCTCTCTATAATTGGCGCACCCAACAGGGATCGAACCTGTGACCTCCAGCTTCGGAAACTGACACTCTTCCAACTGAGCTATGGGTGCAGGGAAGGCGTAAGATTAACGCAAATCCCGCCTGTTGGCAAAGCCTATTATGCAGGATGGCGCAAACAAGACAAATTCGCAGAAAATTCCCCGCAAATAATCAACAACATAACCAATCCACCCCTTAACAAATGGCAAAAAACTGCCGCCTTTGCGTATATTTTCCACAAGAGCGATTGGAAAGCCCCTGTGAATTCAGTATAATCCAGCAAAATATTGTTAACTGCGTTTAACACACCAAACTATAACTCAAAGCACAACCTAACCTAACGGCGAGGCCTACCAAATGAAACAACTCCGCGACTCAAAAGCCCAAGGCTCTGCATTGTTCA