Botulism is caused by botulinum neurotoxins (BoNTs), extremely toxic proteins which can induce respiratory failure leading to long-term intensive care or death. Treatment for botulism includes administration of antitoxins, which must be administered early in the course of the intoxication; therefore, rapid determination of human exposure to BoNT is an important public health goal. In previous work, our laboratory reported on Endopep-MS, a mass spectrometry-based activity method for detecting and differentiating BoNT/A, /B, /E, and /F in clinical samples. We also demonstrated that antibody-capture is effective for purification and concentration of BoNTs from complex matrices such as clinical samples. However, some antibodies inhibit or neutralize the enzymatic activity of BoNT, so the choice of antibody for toxin extraction is critical.
In this work, we evaluated 24 anti-BoNT/B monoclonal antibodies (mAbs) for their ability to inhibit the
In addition to determining
Botulism is a disease which can be fatal if untreated and is caused by exposure to any one of the highly toxic protein family known as botulinum neurotoxins (BoNTs).
Previously, our laboratory reported in several publications on the development of the Endopep-MS method as an assay for BoNT detection and serotype differentiation [
Similar to the other BoNT serotypes, BoNT/B consists of a heavy chain (HC) of approximately 100,000 daltons and a light chain (LC) of about 50,000 daltons. The heavy chain is mainly responsible for both receptor binding by its C-terminal (CT) binding domain [
Previously, our laboratory demonstrated that the Endopep-MS assay can be used to detect all currently known available subtypes of BoNT/B [
Botulinum neurotoxin is very toxic and must be handled with extreme care and appropriate safety measures. All neurotoxins were handled in a level 2 biosafety cabinet equipped with HEPA filters. Commercially purified BoNT/B1 (strain Okra) was purchased from Metabiologics (Madison, WI). Crude culture supernatants representing various BoNT/B subtypes [
Strain information on culture supernatants used for this study.
| Sample | Strain | NCBI accession # |
|---|---|---|
| B1 (proteolytic) | Okra | AB232927 |
| B2 (proteolytic) | 213B | ABM73972 |
| B3 (proteolytic) | CDC 795 | EF028400 |
| B4 (nonproteolytic) | Eklund 17B | EF051570 |
| B5 (bivalent) | An436 | EF028397 |
Dynabeads® Protein G was purchased from Invitrogen (Carlsbad, CA) at 1.3 g/cm3 in phosphate-buffered saline, pH 7.4, containing 0.1% Tween®-20 and 0.02% sodium azide. Except where indicated, all chemicals were from Sigma-Aldrich (St. Louis, MO). Peptides were synthesized by Los Alamos National Laboratory (Los Alamos, NM) and are identical to those reported previously [
All the mAbs used in this report were first selected or engineered as antibody leads from scFv or Fab display immune libraries and converted into full-length human IgG1 as previously reported [
A 2-μL solution containing 30 ng of each titered IgG was added to a 2-μL solution containing 25 mLD50 of BoNT/B1, or estimated levels of 10-25 mLD50 of/B2,/B3,/B4, or/B5. The mixtures were incubated for 1 h at room temperature with no agitation. Then, 16 μL of a reaction mixture (0.05 M Hepes [pH 7.3], 25 mM dithiothreitol, 20 μM ZnCl2, 1 mg/mL bovine serum albumin, and 50 pmol/μL of peptide substrate) was added to the mixture. All samples then were incubated at 37°C for 4 h with no agitation. All assays were performed in duplicate and results were averaged.
The IgG was immobilized and cross-linked to the Dynabeads® Protein G as described in previous publications [
As precise mouse LD50 titer data were unavailable for the crude toxin extract of BoNT/B2, /B3, /B4, and /B5, we first estimated the activity of these subtypes by testing 25 mLD50 of BoNT/B1 in a 2 μL volume in parallel with 2 μL of varying dilutions in water of the crude extract containing BoNT/B2, /B3, /B4, and /B5. All samples were then incubated with 18 μL of a reaction mixture (0.05 M Hepes [pH 7.3], 25 mM dithiothreitol, 20 μM ZnCl2, 1 mg/mL bovine serum albumin, and 50 pmol/μL of peptide substrate) for 4 hr at 37C.
A master mix was created consisting of 9 parts matrix solution (alpha-cyano-4-hydroxy cinnamic acid) at 5 mg/mL in 50% acetonitrile, 0.1% trifluoroacetic acid (TFA), and 10 mM ammonium phosphate) and 1 part ISTD in water at 5 μM. To 18 μL of this master mix, 2 μL of each reaction supernatant were added. We pipetted 0.5 μL of this mixture onto each spot of a 384-spot matrix-assisted laser desorption/ionization (MALDI) plate (Applied Biosystems, Framingham, MA). Mass spectra of each spot were obtained by scanning from 1100 to 5500
The mAbs evaluated in this work bound 11 different epitopes on the BoNT/B HC, HN, or LC (Table
Affinities, domain specificity, and epitopes of 24 human mAbs to BoNT/B.
| mAb | BoNT/B epitope | KD BoNT/B1 (pM) | KD BoNT/B2 (pM) | KD BoNT/B3 (pM) | KD BoNT/B4 (pM) |
|---|---|---|---|---|---|
| 6A12 | HC epitope 1 | 5150 | NB | NB | NB |
| B12.1 | HC epitope 1 | 40.21 | 15.42 | 52.28 | 624.50 |
| B12.2 | HC epitope 1 | 346 | 90.11 | NM | NM |
| 1B12.3 | HC epitope 1 | 75.73 | 57.05 | 68.1 | 356.73 |
| 1B12.4 | HC epitope 1 | 15.60 | 27.11 | 9.39 | 399 |
| 2B30 | HC epitope 1 | 370(scFv) | 190(scFv) | NB | NB |
| B1.1 | HC epitope 2 | 477(scFv) | NB | NB | NB |
| B8.1 | HC epitope 3 | 46.03 | 90.12 | NB | NM |
| A12 | HC epitope 3 | 2100 | NB | NB | NB |
| B11E8 | HN epitope 4 | 6.59 | 18.1 | 15.60 | NB |
| 1B18.1 | HN epitope 5 | 545 | 818 | 976 | 21 |
| 2B18.1 | HN epitope 5 | 63 | 181 | 91 | 312 |
| 2B18.2 | HN epitope 5 | 30.82 | 83.75 | 228(scFv) | 526(scFv) |
| 2B18.3 | HN epitope 5 | 17.4 | 20.33 | 128 | 3108 |
| B6.1 | LC epitope 6 | 6.82 | 9.18 | 28.5 | 9.41 |
| 2B24 | LC epitope 6 | 7.8 | 10.38 | 5.44 | 5.96 |
| 1B10.1 | LC epitope 7 | 0.33 | 0.35 | 1206 | 0.41 |
| 2B27 | LC epitope 7-8 | 165.4 | 560(scFv) | 2320(scFv) | 77(scFv) |
| 1B22 | LC epitope 8-9 | 336.1 | 319.3 | 221.1 | 128.6 |
| 1B22.4 | LC epitope 8-9 | 139(scFv) | 110(scFv) | 141(scFv) | 129(scFv) |
| 2B25.1 | LC epitope 8-9 | 16.69 | 53.32 | 9.07 | 29.53 |
| 2B29 | LC epitope 9 | 856.7 | 1020 | 1610 | 1290 |
| 2B23 | LC epitope 10 | 38.07 | 45.63 | 54.89 | 48.23 |
| 4B19.1 | LC epitope 10 | 176.1 | 138.5 | 115.5 | 194 |
Affinities were measured for IgG using flow fluorimetry in a KinExA or for yeast displayed scFv using FACS (indicated as scFv after the KD data). Epitope numbers identify mAbs whose binding sites on BoNT/B overlap; mAb with the same epitope number cannot bind BoNT/B simultaneously. "NB" means no binding detected at the highest concentration of toxin (up to 1 μM) tested. "NM" means no measurement was performed for that specific subtype of toxin.
The inhibition experiment was performed with a panel of 24 mAbs (Table
Peak area ratios of the peptide cleavage product divided by the internal standard peptide obtained from the Endopep-MS reaction of BoNT/B with its peptide substrate in the presence of the antibody panel.
| Antibody | BoNT/B1 | BoNT/B2 | BoNT/B3 | BoNT/B4 | BoNT/B5 |
|---|---|---|---|---|---|
| None | 0.43 | 1.65 | 0.72 | 0.48 | 0.73 |
| CR2 | 0.38 | 1.59 | 0.79 | 0.51 | 1.08 |
| 6A12 | 0.78 | 2.16 | 0.93 | 0.35 | 0.87 |
| A12 | 0.76 | 2.11 | 0.83 | 0.53 | 0.96 |
| B12.2 | 0.68 | 2.24 | 0.85 | 0.53 | 0.89 |
| B8.1 | 0.66 | 2.13 | 0.95 | 0.48 | 1.06 |
| B12.1 | 0.63 | 1.75 | 1.03 | 0.48 | 1.30 |
| 2B18.2 | 0.62 | 1.83 | 0.8 | 0.56 | 1.24 |
| 2B24 | 0.57 | 1.78 | 0.74 | 0.53 | 1.07 |
| B1.1 | 0.56 | 2.31 | 0.81 | 0.54 | 1.72 |
| 2B18.1 | 0.55 | 1.39 | 0.88 | 0.61 | 1.09 |
| 1B18.1 | 0.51 | 2.22 | 1.07 | 0.68 | 0.45 |
| 2B30 | 0.50 | 1.84 | 1.29 | 0.93 | 0.58 |
| 2B23 | 0.46 | 1.45 | 0.85 | 0.56 | 1.32 |
| B11E8 | 0.44 | 2.44 | 0.89 | 0.51 | 0.82 |
| 2B18.3 | 0.44 | 2.16 | 0.75 | 0.64 | 0.76 |
| 1B12.4 | 0.40 | 1.28 | 0.89 | 0.77 | 1.18 |
| 4B19.1 | 0.38 | 1.49 | 0.92 | 0.71 | 0.60 |
| 1B22.4 | 0.37 | 1.58 | 0.92 | 0.28 | 0.80 |
| 1B12.3 | 0.35 | 1.31 | 0.68 | 0.70 | 1.07 |
| B6.1 | 0.32 | 2.08 | 0.87 | 0.32 | 1.49 |
| 1B22 | 0.31 | 1.64 | 1.04 | 0.27 | 0.71 |
| 2B29 | 0.30 | 1.75 | 0.98 | 0.42 | 0.65 |
| 2B27 | 0.28 | 1.01 | 0.62 | 0.24 | 0.72 |
| 2B25.1 | 0.27 | 1.01 | 0.87 | 0.25 | 0.70 |
| 1B10.1 | 0 | 0.02 | 0.19 | 0.10 | 0.65 |
Five different subtypes of BoNT/B were used, and they include /B1, /B2, /B3, /B4, and /B5.
The inhibition studies show that the catalytic activity of BoNT/B1 toxin is inhibited to some degree in the presence of only a portion of the tested mAbs (Table
These data indicate that mAb 6A12 serves as an activator of the LC enzymatic activity of BoNT/B1 toxin; many of the other mAbs tested also appeared to activate the LC of the toxin to some degree. However, the amount of NT cleavage product is much smaller with the mAb 2B27 reaction (Figure
The BoNT/B2 protein differs from BoNT/B1 by 4% at the amino acid level. Because it is important to understand whether this level of genetic differences results in inhibition differences with various mAbs, all 24 mAbs were also examined for their enzymatic inhibition of BoNT/B2. The data in Table
The proteolytic subtype BoNT/B3 also differs from BoNT/B1 by 4% at the amino acid level, and it differs from BoNT/B2 by 2%, so we examined the effect of all 24 mAbs against BoNT/B3 as well. The results, depicted in Figure
Non-proteolytic BoNT/B4 is the most dissimilar among all the BoNT/B subtypes and differs from BoNT/B1 by 7% at the amino acid level. This toxin, like all other BoNT/B, is produced as a single chain neurotoxin, but unlike other BoNT/B, it remains as a single chain as opposed to being cleaved into a dichain toxin. Incubating this toxin with the panel of 24 mAbs yielded much the same results as with the other BoNT/B subtypes. This is seen in Figure
BoNT/B5, produced by bivalent
After determining which antibodies were inhibitory toward the catalytic activity of BoNT/B1-/B5, we wanted to examine the ability of any of the panel of 24 mAbs in our assay to extract BoNT/B1-/B5 in the Endopep-MS assay. Extraction assessed both the ability of the mAb to bind BoNT/B, reflected by the mAb affinity, as well as the inhibition of BoNT/B by the mAbs. All mAbs were used to extract the same level of BoNT/B from a buffer solution. After extraction, the toxins on the beads were added to identical reaction mixtures containing peptide substrate. Upon mass spectrometric analysis, it was apparent that the mAb B12.2 (Figure
Table
Peak area ratios of the peptide cleavage product divided by the internal standard peptide obtained from the Endopep-MS reaction of BoNT B after its extraction by the antibody panel.
| Antibody | BoNT/B1 | BoNT/B2 | BoNT/B3 | BoNT/B4 | BoNT/B5 |
|---|---|---|---|---|---|
| None | 1.02 | 1.62 | 0.46 | 0.14 | 1.26 |
| B11E8 | 4.03 | 1.68 | 5.71 | 0.002 | 1.84 |
| 1B12.3 | 3.58 | 1.68 | 4.31 | 0.09 | 1.85 |
| 2B18.2 | 3.47 | 1.25 | 5.58 | 0.29 | 1.60 |
| B8.1 | 3.30 | 1.44 | 0.54 | 0.14 | 0.009 |
| B12.2 | 3.30 | 1.70 | 4.14 | 0.15 | 1.35 |
| 2B30 | 3.21 | 1.27 | 4.44 | 0.002 | 1.35 |
| B12.1 | 3.18 | 1.89 | 5.51 | 0.19 | 1.65 |
| 1B18.1 | 3.14 | 1.23 | 4.98 | 0.19 | 1.51 |
| 2B18.3 | 3.14 | 1.17 | 5.14 | 0.17 | 1.39 |
| 2B18.1 | 3.04 | 1.15 | 3.94 | 0.22 | 1.62 |
| 1B12.4 | 2.92 | 1.11 | 3.35 | 0.13 | 2.26 |
| 2B24 | 2.76 | 1.01 | 2.93 | 0.19 | 1.60 |
| 2B23 | 2.68 | 1.18 | 3.24 | 0.11 | 1.19 |
| 2B25.1 | 2.38 | 0.72 | 1.69 | 0.05 | 0.69 |
| A12 | 2.36 | 1.47 | 0.99 | 0.12 | 0 |
| B6.1 | 2.35 | 1.12 | 3.16 | 0.15 | 1.51 |
| 4B19.1 | 2.31 | 1.25 | 3.93 | 0.21 | 2.11 |
| 6A12 | 1.39 | 1.09 | 2.50 | 0.07 | 1.18 |
| 1B22 | 0.95 | 0.72 | 3.79 | 0.03 | 0.95 |
| 2B27 | 0.92 | 0.56 | 1.29 | 0.05 | 1.12 |
| 2B29 | 0.88 | 0.80 | 1.90 | 0.03 | 0.87 |
| 1B22.4 | 0.54 | 0.21 | 0.32 | 0.009 | 0.06 |
| B1.1 | 0 | 0 | 0 | 0 | 0.002 |
| 1B10.1 | 0 | 0 | 0 | 0 | 0.11 |
Five different subtypes of BoNT/B were used, and they include /B1, /B2, /B3, /B4, and /B5.
After examining a panel of BoNT/A [
The phenomenon of toxin activation by antibody binding is not a novel one [
Not all of the anti-BoNT/B mAbs were LC activators. For example, mAb 1B10.1 inhibited the LC activity of four of the five BoNT/B subtypes. Antibody 1B10.1 bound the LC of the toxin (Table
Another inhibitory antibody is 2B27, which bound the LC of the toxin. The 2B27 epitope overlaps the epitope of mAb 1B10.1 (Table
B6.1 was inhibitory for some BoNT/B subtypes, but acted as an activator of LC activity for other subtypes. mAb B6.1 bound the LC of toxin on epitope 6; however, it did not bind in close proximity to the enzymatic active site (Figure
The extraction efficiency experiments also shed some light on the interaction of these mAbs with the different BoNT/B subtypes. Three mAbs which had poor extraction efficiency were 1B10.1, 1B22.4, and B1.1. Because the inhibitory experiments showed that the mAbs 1B10.1 and 1B22.4 inhibited the enzymatic activity of BoNT/B, the decreased cleavage products after extraction with these mAbs were likely due to inhibition of activity rather than poor extraction efficiency. In contrast, the mAb B1.1 was a moderate to strong LC activator in the antibody inhibitory study but was one of the worst mAbs for extracting all five BoNT/B subtypes tested. This could be attributed to the relatively low affinity of mAb B1.1 for BoNT/B, or it may reflect either poor coupling of the mAb to the beads or inactivation of the mAb upon coupling.
Additionally, the extraction efficiency experiments demonstrated that some mAbs work very well for most subtypes, but not all of them. For example, mAb B11E8 yielded the highest or second highest response in terms of activity for BoNT/B1, /B2, /B3, and /B5, but was one of the worst choices for BoNT/B4. This mAb was not inhibitory for the activity of BoNT/B4; rather, this mAb has no affinity for BoNT/B4 compared to the other subtypes.
The Endopep-MS assay relies upon mAb extraction of BoNT from a clinical or food sample as a sample preparation step before analysis for the toxin, so high affinity, non-inhibitory mAbs are critical components of the assay. Additionally, mAbs that activate the enzymatic activity of the toxin after binding may further improve the sensitivity of detection in the Endopep-MS assay. Therefore, it is important to assess the binding affinities and potential enzymatic inhibition abilities of mAbs against a variety of BoNT subtypes within the chosen serotype before choosing mAbs for extraction. This assessment of a large panel of monoclonal BoNT/B antibodies should enable us to identify an antibody or a few mAbs that demonstrate strong extraction efficiency for all known BoNT/B, which currently includes the BoNT/B1-/B6 subtypes, without inhibiting the enzymatic activity of the toxin.
After testing a panel of 24 fully human antibodies against all BoNT/B subtypes in our possession, BoNT/B1-/B5, and examining both their inhibitory ability as well as their extraction efficiency, mAbs that had good results with all five subtypes were mAbs 1B18.1, 2B18.1, 2B18.2, 2B18.3, B12.2, and 2B23. Four of these mAbs (1B18.1, 2B18.1, 2B18.2, and 2B18.3) are clonally related, having almost the same HC variable regions and different LC variable regions, and binding to the same HN epitope. Antibodies interacting with all three domains of the toxin were represented, as B12.2 bound to the HC and 2B23 bound to the LC. It is known that using multiple mAbs which bind non-overlapping epitopes increases the effective affinity for the toxin by as much as 200-fold over the affinity of the individual antibodies [
1B18.1, 2B18.1, 2B18.2, and 2B18.3 bound the same epitope in the translocation domain. Examining their results in the extraction assay presented here, we found that 2B18.2 yielded the best overall results for subtypes BoNT/B1-/B5. Because of this, we are opting to use 2B18.2 as one of the mAbs for extraction of BoNT/B1-/B5 from sample matrices before analysis with the Endopep-MS method. Among the final list of mAbs which yielded excellent extraction results with all five subtypes tested, there were two binding unique epitopes which could be used: B12.2 and 2B23. B12.2 had better performance than 2B23, so we are opting to use B12.2, directed against the receptor binding portion of the HC, as a second mAb for extraction of BoNT/B1-/B5 from sample matrices before analysis with the Endopep-MS method. Unfortunately, BoNT/B6, the only other currently known BoNT/B subtype, was not available to us for testing. However, the sequence of BoNT/B6 for the epitope bound by 2B18.2 is completely conserved, so it would be anticipated that 2B18.2 could efficiently extract BoNT/B6 [
In addition to determining the best mAbs for sample preparation before Endopep-MS, this work determined
SRK conceived of the study and participated in its design and coordination, and helped to draft the manuscript; WIS participated in testing the mAbs with Endopep-MS for extraction and inhibition; JL participated in producing and characterizing the mAbs used in this study and helped to draft the manuscript; ING participated in producing and characterizing the mAbs used in this study; CGR participated in producing and characterizing the mAbs used in this study and in epitope mapping; TJS conceived of the study, participated in its design and coordination, and helped to draft the manuscript; JDM conceived of the study, participated in its design and coordination, and helped to draft the manuscript; LAS participated in the study design and its coordination; JLP participated in the study design and its coordination; JRB conceived of the study and participated in its design and coordination, and helped to draft the manuscript. All authors read and approved the final manuscript.
Opinions, interpretations, conclusions, and recommendations are those of the authors and are not necessarily endorsed by the Centers for Disease Control and Prevention or the U.S. Army. The project described was supported by Award Number U01AI056493 and IAA B18-120 from the National Institute of Allergy and Infectious Diseases. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institute of Allergy and Infectious Diseases or the National Institutes of Health.