<!DOCTYPE article
PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Archiving and Interchange DTD with MathML3 v1.3 20210610//EN" "JATS-archivearticle1-3-mathml3.dtd">
<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" dtd-version="1.3" xml:lang="en" article-type="research-article"><?properties open_access?><?properties manuscript?><processing-meta base-tagset="archiving" mathml-version="3.0" table-model="xhtml" tagset-family="jats"><restricted-by>pmc</restricted-by></processing-meta><front><journal-meta><journal-id journal-id-type="nlm-journal-id">101522599</journal-id><journal-id journal-id-type="pubmed-jr-id">37026</journal-id><journal-id journal-id-type="nlm-ta">Ticks Tick Borne Dis</journal-id><journal-id journal-id-type="iso-abbrev">Ticks Tick Borne Dis</journal-id><journal-title-group><journal-title>Ticks and tick-borne diseases</journal-title></journal-title-group><issn pub-type="ppub">1877-959X</issn><issn pub-type="epub">1877-9603</issn></journal-meta><article-meta><article-id pub-id-type="pmid">40112617</article-id><article-id pub-id-type="pmc">12232624</article-id><article-id pub-id-type="doi">10.1016/j.ttbdis.2025.102463</article-id><article-id pub-id-type="manuscript">NIHMS2091310</article-id><article-categories><subj-group subj-group-type="heading"><subject>Article</subject></subj-group></article-categories><title-group><article-title>Prevalence of <italic toggle="yes">Rickettsia</italic> species phylotype G022 and <italic toggle="yes">Rickettsia tillamookensis</italic> in <italic toggle="yes">Ixodes pacificus</italic> nymphs and adults from Northern California<sup><xref rid="FN1" ref-type="fn">&#x02606;</xref></sup></article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Trent</surname><given-names>Erin</given-names></name><xref rid="A1" ref-type="aff">a</xref></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid" authenticated="false">http://orcid.org/0000-0002-4475-4539</contrib-id><name><surname>Swei</surname><given-names>Andrea</given-names></name><xref rid="A2" ref-type="aff">b</xref></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid" authenticated="false">http://orcid.org/0000-0001-6041-5126</contrib-id><name><surname>Feiszli</surname><given-names>Tina</given-names></name><xref rid="A3" ref-type="aff">c</xref></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid" authenticated="false">http://orcid.org/0000-0003-3537-7652</contrib-id><name><surname>Saunders</surname><given-names>Megan E.M.</given-names></name><xref rid="A3" ref-type="aff">c</xref></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid" authenticated="false">http://orcid.org/0000-0002-4746-8458</contrib-id><name><surname>Zhong</surname><given-names>Jianmin</given-names></name><xref rid="A1" ref-type="aff">a</xref><xref rid="CR1" ref-type="corresp">*</xref></contrib></contrib-group><aff id="A1"><label>a</label> Department of Biological Sciences, Cal Poly Humboldt, Arcata, CA, USA</aff><aff id="A2"><label>b</label> Department of Biology, San Francisco State University, San Francisco, CA, USA</aff><aff id="A3"><label>c</label> Vector-Borne Disease Section, Infectious Diseases Branch, California Department of Public Health, Richmond, CA, USA</aff><author-notes><corresp id="CR1"><label>*</label> Corresponding author at: Department of Biological Sciences, Cal Poly Humboldt, Arcata, CA, USA. <email>jz15@humboldt.edu</email> (J. Zhong).</corresp></author-notes><pub-date pub-type="nihms-submitted"><day>1</day><month>7</month><year>2025</year></pub-date><pub-date pub-type="ppub"><month>5</month><year>2025</year></pub-date><pub-date pub-type="epub"><day>19</day><month>3</month><year>2025</year></pub-date><pub-date pub-type="pmc-release"><day>07</day><month>7</month><year>2025</year></pub-date><volume>16</volume><issue>3</issue><fpage>102463</fpage><lpage>102463</lpage><permissions><license><ali:license_ref xmlns:ali="http://www.niso.org/schemas/ali/1.0/" specific-use="textmining" content-type="ccbylicense">https://creativecommons.org/licenses/by/4.0/</ali:license_ref><license-p>This is an open access article under the CC BY license (<ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link>).</license-p></license></permissions><abstract id="ABS1"><p id="P1">Ticks are known vectors of various pathogenic bacteria, including species of <italic toggle="yes">Rickettsia</italic>. Two novel <italic toggle="yes">Rickettsia</italic> species have been identified in adult <italic toggle="yes">Ixodes pacificus: Rickettsia</italic> species phylotype G022 in 2011 and <italic toggle="yes">R. tillamookensis</italic> in 2021. Currently, the pathogenic potential of these species found in <italic toggle="yes">I. pacificus</italic> remains unknown. This study aimed to determine the prevalence of phylotype G022 and <italic toggle="yes">R. tillamookensis</italic> in <italic toggle="yes">I. pacificus</italic> nymphs across different mean annual temperature and relative humidity zones in California. Adult ticks were also tested for phylotype G022. Ticks were collected from multiple locations in seven northern California counties and tested by real-time PCR. The overall prevalence of phylotype G022 and <italic toggle="yes">R. tillamookensis</italic> in nymphs (<italic toggle="yes">n</italic> = 550) was 5.3 % (95 % CI = 3.7 %-7.5 %) and 1.6 % (95 % CI=0.8 %&#x02013;3.3 %), respectively. The overall prevalence of phylotype G022 in adult <italic toggle="yes">I. pacificus</italic> (<italic toggle="yes">n</italic> = 720) was 9.0 % (95 % CI = 7.2 %-11.3 %). Phylotype G022 infects nymphal <italic toggle="yes">I. pacificus</italic> across a broad geographic range. The prevalence of phylotype G022 was higher in the 11.7&#x02013;13.3 &#x000b0;C (53&#x02013;56&#x000b0;F) temperature zone, at 6.4 % (95 % CI = 4.5 %-9.2 %), compared to the 13.9&#x02013;15 &#x000b0;C (57&#x02013;59&#x000b0;F) zone, where the prevalence was 0.8 % (95 % CI = 0.2 %-4.6 %). In contrast, the prevalence of <italic toggle="yes">R. tillamookensis</italic> did not show a statistically significant difference between the two temperature zones, with 1.9 % (95 % CI = 0.9 %-4.1 % in the 11.7&#x02013;13.3 &#x000b0;C (53&#x02013;56&#x000b0;F) zone and 0.9 % (95 % CI = 0.2 %-4.9 %) in the 13.9&#x02013;15 &#x000b0;C (57&#x02013;59&#x000b0;F) zone. The detection of phylotype G022 in both questing nymphs and adults of <italic toggle="yes">I. pacificus</italic> suggests that it is transmitted transstadially. qPCR testing revealed no coinfections of G022 and <italic toggle="yes">R. tillamookensis</italic> in any of the nymphs. Although <italic toggle="yes">R. tillamookensis</italic> exhibited a lower overall prevalence in nymphs compared to phylotype G022, both bacteria exhibited a similar geographic distribution.</p></abstract><kwd-group><kwd><italic toggle="yes">Ixodes pacificus</italic></kwd><kwd>Nymphal ticks</kwd><kwd><italic toggle="yes">Rickettsia</italic> species phylotype G022</kwd><kwd><italic toggle="yes">Rickettsia tillamookensis</italic></kwd></kwd-group></article-meta></front><body><sec id="S1"><label>1.</label><title>Introduction</title><p id="P2">Ticks transmit the greatest variety of arthropod-borne pathogens that cause the most cases of vector-borne disease in the United States and Northern Hemisphere, second only to mosquitoes worldwide (<xref rid="R47" ref-type="bibr">Socolovschi et al., 2009</xref>; <xref rid="R13" ref-type="bibr">Eisen et al., 2017</xref>; <xref rid="R48" ref-type="bibr">Sonenshine and Macaluso, 2017</xref>; <xref rid="R31" ref-type="bibr">MacDonald, 2018</xref>; <xref rid="R49" ref-type="bibr">Swei et al., 2020</xref>). California is home to several medically important ticks including the western black-legged tick, <italic toggle="yes">Ixodes pacificus</italic> (<xref rid="R13" ref-type="bibr">Eisen et al., 2017</xref>; <xref rid="R16" ref-type="bibr">Furman and Loomis, 1984</xref>), the primary vector of pathogens causing Lyme borreliosis, human anaplasmosis, and <italic toggle="yes">Borrelia miyamotoi</italic> disease in the western United States. While nymphal and adult <italic toggle="yes">I. pacificus</italic> ticks transmit pathogens, the nymphs are thought to account for more disease transmission to humans and other vertebrates due to their smaller size and their peak questing activities coinciding with increased outdoor activity by people (<xref rid="R7" ref-type="bibr">Clover and Lane, 1995</xref>; <xref rid="R37" ref-type="bibr">Padgett and Bonilla 2011</xref>). The nymphal stage of <italic toggle="yes">I. pacificus</italic> has also been shown to have a higher burden of certain pathogenic bacteria, such as <italic toggle="yes">Borrelia burgdorferi</italic>, than the adult stage (<xref rid="R7" ref-type="bibr">Clover and Lane, 1995</xref>; <xref rid="R26" ref-type="bibr">Lane and Quistad, 1998</xref>; <xref rid="R23" ref-type="bibr">Kuo et al., 2000</xref>).</p><p id="P3"><italic toggle="yes">I. pacificus</italic> is established in at least 55 of California&#x02019;s 58 counties and is commonly found in dense woodlands with a moist microclimate (<xref rid="R9" ref-type="bibr">Eisen et al., 2006</xref>, <xref rid="R12" ref-type="bibr">2016</xref>; <xref rid="R31" ref-type="bibr">MacDonald, 2018</xref>). Moreover, multiple biotic and abiotic factors have determined contemporary and likely future suitable habitats for this tick (<xref rid="R19" ref-type="bibr">Hahn et al., 2016</xref>, <xref rid="R18" ref-type="bibr">2021</xref>; <xref rid="R14" ref-type="bibr">Eisen et al., 2018</xref>). Seasonal variability in temperature, relative humidity, and precipitation may lead to increases in suitability over time (<xref rid="R19" ref-type="bibr">Hahn et al., 2016</xref>, <xref rid="R18" ref-type="bibr">2021</xref>; <xref rid="R14" ref-type="bibr">Eisen et al., 2018</xref>). Temperature and relative humidity are important factors influencing tick density and may also influence pathogen infection in <italic toggle="yes">I. pacificus</italic> (<xref rid="R14" ref-type="bibr">Eisen et al., 2018</xref>, <xref rid="R9" ref-type="bibr">2006</xref>, <xref rid="R12" ref-type="bibr">2016</xref>).</p><p id="P4">Globally, 20 species of <italic toggle="yes">Rickettsia</italic> are known human pathogens, 16 of which are transmitted by ticks (<xref rid="R4" ref-type="bibr">Centers for Disease Control and Prevention [CDC], 2019</xref>). There are more tick-associated rickettsiae with undetermined pathogenicity being discovered episodically (<xref rid="R38" ref-type="bibr">Parola et al., 2013</xref>). Although the identities of other bacterial pathogens <italic toggle="yes">I. pacificus</italic> harbors have been well researched, studies on <italic toggle="yes">Rickettsia</italic> sp. carried by this tick are limited (<xref rid="R24" ref-type="bibr">Lane et al., 1981a</xref>; <xref rid="R25" ref-type="bibr">Lane et al., 1981b</xref>; <xref rid="R41" ref-type="bibr">Philip et al., 1981</xref>; <xref rid="R38" ref-type="bibr">Parola et al., 2013</xref>; <xref rid="R51" ref-type="bibr">Xu et al., 2019</xref>; <xref rid="R43" ref-type="bibr">Salkeld et al., 2021</xref>). For example, <italic toggle="yes">Rickettsia tillamookensis</italic> was first described from <italic toggle="yes">I. pacificus</italic> in 1976 and although shown to be mildly virulent in guinea pigs and deadly to mice, it remained unstudied until recently (<xref rid="R21" ref-type="bibr">Hughes et al., 1976</xref>; <xref rid="R17" ref-type="bibr">Gauthier et al., 2021</xref>; <xref rid="R35" ref-type="bibr">Paddock et al., 2022</xref>). <italic toggle="yes">R. tillamookensis</italic> was originally a member of the spotted fever group, but current molecular and phylogenetic analyses placed this species in a transitional group related to <italic toggle="yes">R. asembonensis</italic> and <italic toggle="yes">R. felis</italic> strain Pedreira, two species carried by cat fleas (<xref rid="R21" ref-type="bibr">Hughes et al., 1976</xref>; <xref rid="R17" ref-type="bibr">Gauthier et al., 2021</xref>; <xref rid="R32" ref-type="bibr">Maina et al., 2016</xref>, <xref rid="R33" ref-type="bibr">2019</xref>).</p><p id="P5">In a 2011 study, <italic toggle="yes">Rickettsia</italic> species phylotype G022 (hereinafter, G022) and <italic toggle="yes">Rickettsia monacensis</italic> str. Humboldt (also known as <italic toggle="yes">Rickettsia</italic> species phylotype G021, abbreviated as strain Humboldt to differentiate it from the IrR/Munich strain of <italic toggle="yes">R. monacensis</italic> found in Europe) were first identified from adult <italic toggle="yes">I. pacificus</italic> ticks collected in California (<xref rid="R40" ref-type="bibr">Phan et al., 2011</xref>; <xref rid="R46" ref-type="bibr">Simser et al., 2002</xref>). In a follow up study, 2 % of adult <italic toggle="yes">I. pacificus</italic> tested positive for G022 and 100 % were found infected with strain Humboldt (<xref rid="R5" ref-type="bibr">Cheng et al., 2013a</xref>). Further studies showed transovarial and transstadial transmission of strain Humboldt was 100 %, and it possessed the ability to synthesize folate de novo, supporting the hypothesis that strain Humboldt is an endosymbiont (<xref rid="R5" ref-type="bibr">Cheng et al., 2013a</xref>, <xref rid="R6" ref-type="bibr">2013b</xref>; <xref rid="R22" ref-type="bibr">Hunter et al., 2015</xref>). Preliminary phylogenetics placed G022 as a novel spotted fever group <italic toggle="yes">Rickettsia</italic>, with its capability to impact human health currently unknown (<xref rid="R40" ref-type="bibr">Phan et al., 2011</xref>).</p><p id="P6">Here, we examined the prevalence of G022 in <italic toggle="yes">I. pacificus</italic> nymphs and adults from multiple locations in California. This study represents the first investigation of G022 in <italic toggle="yes">I. pacificus</italic> nymphs. Additionally, nymphs were tested for <italic toggle="yes">R. tillamookensis</italic>. The prevalence of infection between and among collection sites were compared to determine if there were significant differences based on habitat type and climatic factors.</p></sec><sec id="S2"><label>2.</label><title>Materials and methods</title><sec id="S3"><label>2.1.</label><title>Tick collections</title><p id="P7">Location and vegetational data were recorded from each collection site and used to categorize the habitat type as montane hardwood conifer, coastal oak woodland, redwood, or annual grassland (<xref rid="R34" ref-type="bibr">Mayer and Laudenslayer, 1988</xref>). Location data from previously published research were used to determine where to collect questing ticks (<xref rid="R40" ref-type="bibr">Phan et al., 2011</xref>; <xref rid="R5" ref-type="bibr">Cheng et al., 2013a</xref>). <italic toggle="yes">Ixodes pacificus</italic> were collected in Alameda, Contra Costa, Humboldt, Mendocino, Napa, Santa Cruz, and Sonoma counties (<xref rid="F1" ref-type="fig">Fig. 1</xref> and <xref rid="T1" ref-type="table">Table 1</xref>) by dragging a 1-m<sup>2</sup> white cotton flag over vegetation alongside wooded trails, in leaf litter, on tree trunks, logs, and rocks. Ticks were identified using key diagnostic characters presented in <xref rid="R16" ref-type="bibr">Furman and Loomis (1984)</xref>.</p><p id="P8">Climatic data provided by the U.S. Forest Service&#x02019;s ECOMAP 2007 and PRISM climate mapping system collaboration was used to assess any associations between prevalence and two climatic variables, mean annual temperature and mean annual relative humidity (<xref rid="R50" ref-type="bibr">USDA- Forest Service, 2017</xref>).</p></sec><sec id="S4"><label>2.2.</label><title>DNA extraction</title><p id="P9">Adult <italic toggle="yes">I. pacificus</italic> were kept alive and nymphs were stored in 70 % ethanol until processed. Ticks were cleaned in a series of bleach, ethanol, and water rinses and bisected using a sterile razor blade (<xref rid="R2" ref-type="bibr">Binetruy et al., 2019</xref>). Qiagen DNeasy Blood and Tissue kits (Germantown, MD) were used to extract DNA, with a total elution volume of 100 &#x003bc;L. For adults, half of the bisect was stored for future research. A mock extraction was included for each set of samples to be used as a negative control in quantitative polymerase chain reaction (qPCR).</p></sec><sec id="S5"><label>2.3.</label><title>Bacterial detection by qPCR</title><p id="P10">Ticks were tested for G022 following the qPCR protocol from <xref rid="R5" ref-type="bibr">Cheng et al. (2013a)</xref>. The protocol was designed to amplify a 98-bp G022 <italic toggle="yes">ompA</italic> gene fragment. The testing conditions included a Taqman assay to detect the <italic toggle="yes">ompA</italic> amplicon using QuantStudio 3 (ThermoFisher, Carlsbad, CA). The CDC&#x02019;s Rickettsial Zoonoses branch developed a protocol to amplify a 157-bp segment of the aspartate tRNA ligase gene, <italic toggle="yes">aspS</italic>, to determine <italic toggle="yes">R. tillamookensis</italic> prevalence in nymphs, with the testing conducted by their department (<xref rid="R35" ref-type="bibr">Paddock et al., 2022</xref>). The sequences of primers and probes are listed in <xref rid="T2" ref-type="table">Table 2</xref>.</p><p id="P11">For the qPCR experiment, the mock sample obtained during DNA extraction functioned as a negative control, while a non-template control substituted the tick DNA with water. The positive control for G022 was created by ligating the <italic toggle="yes">ompA</italic> gene into the StrataClone<sup>&#x02122;</sup> PCR cloning vector pSC-A (Agilent Technologies, La Jolla, CA). The positive control for <italic toggle="yes">R. tillamookensis</italic> was created by cloning the <italic toggle="yes">aspS</italic> gene using an Invitrogen TOPO TA cloning kit (Thermo Fisher Scientific, Carlsbad, CA). Since a standard for <italic toggle="yes">R. tillamookensis</italic> quantification was not used during testing, the cycle threshold (Ct) values were recorded instead. For qPCR, negative controls were run in triplicate, while the samples and standards were run in duplicate. Due to the lack of DNA concentration measurements before testing, qPCR results are reported as presence/absence without quantitation. Any samples showing amplification underwent a second round of qPCR, set up in the same manner. For both adult and nymphal samples, positive results were defined as having a Ct value below 40 with a DNA band at the expected size on gel electrophoresis for the G022 <italic toggle="yes">ompA</italic> gene, while no gel electrophoresis confirmation was done for the <italic toggle="yes">R. tillamookensis aspS</italic> gene. For the gel electrophoresis, 2 % TAE agarose gels containing 0.52 ug/mL ethidium bromide were made and visualized using an AlphaImager HP Imaging system (Alpha Innotech, San Leandro, CA).</p></sec><sec id="S6"><label>2.4.</label><title>Statistical analysis</title><p id="P12">A two-tailed Fisher&#x02019;s exact test with Bonferroni correction utilizing tidyverse and rstatix programs in R studio was used to evaluate the association among collection sites, counties, habitat types, mean annual temperature, mean annual relative humidity, and G022 or <italic toggle="yes">R. tillamookensis</italic> presence (<xref rid="R42" ref-type="bibr">R Core Team, 2021</xref>). Any p-values less than 0.05 from the Fisher&#x02019;s exact test, adjusted with Bonferroni correction, were further analyzed using a pairwise comparison for post-hoc evaluation. Another Fisher&#x02019;s exact test was used to determine whether there is a statistically significant difference in G022 presence in adult versus nymphal <italic toggle="yes">I. pacificus</italic>. The coefficient of determination (R<sup>2</sup>) was calculated to look at the trends between the various conditions and G022 and <italic toggle="yes">R. tillamookensis</italic> prevalence. Wilson&#x02019;s score 95 % confidence intervals (CI) were used while analyzing in RStudio (<xref rid="R42" ref-type="bibr">R Core Team, 2021</xref>). A 5 % significance value was used for all analyses.</p></sec></sec><sec id="S7"><label>3.</label><title>Results</title><sec id="S8"><label>3.1.</label><title>Adult and nymphal I. pacificus collections</title><p id="P13">A total of 720 adult <italic toggle="yes">I. pacificus</italic> was collected from 4 counties, 7 locations, and 3 habitats, while 550 nymphs were collected from 6 counties, 14 locations, and 3 habitats (<xref rid="F1" ref-type="fig">Fig. 1</xref>). Collection sites, with specific numbers of ticks collected, spanned four habitat types (<xref rid="T1" ref-type="table">Table 1</xref>), four climatic zones based on the mean annual temperature range, and another four climatic zones based on the mean annual relative humidity (<xref rid="F1" ref-type="fig">Fig. 1</xref>).</p></sec><sec id="S9"><label>3.2.</label><title>Prevalence of Rickettsia species phylotype G022 in I. pacificus adults</title><p id="P14">G022 was detected in adult ticks from all four counties. Out of 720 <italic toggle="yes">I. pacificus</italic> adults tested, 65 were positive by qPCR and gel electrophoresis, for an overall prevalence of 9.0 % (95 % CI = 7.2 %&#x02013;11.3 %). Prevalence ranged from a low of 6.5 % in Humboldt County (95 % CI = 5.3 %&#x02013;9.9 %) to a high of 16.7 % in Alameda County (95 % CI = 4.7 %&#x02013;44.8 %) (<xref rid="T1" ref-type="table">Table 1</xref>). There was no statistically significant association between G022 infection in adults and any of the variables tested, which included county (R<sup>2</sup>: 0.94), individual collection sites within the county (R<sup>2</sup>: 0.99), habitat (R<sup>2</sup>: 0.86), mean annual temperature (R<sup>2</sup>: 0.99), and mean annual relative humidity (R<sup>2</sup>: 0.99) (Fisher&#x02019;s exact, <italic toggle="yes">p</italic> &#x0003e; 0.05) (<xref rid="T3" ref-type="table">Tables 3</xref> and <xref rid="T4" ref-type="table">4</xref>).</p></sec><sec id="S10"><label>3.3.</label><title>Prevalence of Rickettsia species phylotype G022 in I. pacificus nymphs</title><p id="P15">Out of 550 nymphs, 29 were positive by qPCR and gel electrophoresis, for an overall prevalence of 5.3 % (95 % CI = 3.7 %&#x02013;7.5 %). The prevalence ranged from a high of 12.3 % (95 % CI = 7.6 %&#x02013;19.3 %) in Napa County to a low of 0 % in Santa Cruz County (95 % CI = 0 %&#x02013;35.4 %). G022 positive nymphs were more likely to be found in Napa County compared to Contra Costa County (Fisher&#x02019;s exact, <italic toggle="yes">p</italic> &#x0003c; 0.01), but no statistical significance was found when conducting pairwise comparisons between the other counties (R<sup>2</sup>: 0.28). There were not any statistically significant associations found between individual collection sites within the county (Fisher&#x02019;s exact, <italic toggle="yes">p</italic> &#x0003e; 0.05, R<sup>2</sup>: 0.01) (<xref rid="T1" ref-type="table">Table 1</xref>).</p><p id="P16">When grouping the data of nymphs by habitat type, prevalence was 5.6 % (95 % CI = 3.9 %&#x02013;7.9 %) in coastal oak woodland and 0 % prevalence in both redwood (95 % CI = 0 %&#x02013;79.4 %) and montane hardwood conifer (95 % CI = 0 %&#x02013;10 %). While positive nymphs were only found in coastal oak woodland, no statistically significant association was found between habitat type and G022 infection (Fisher&#x02019;s exact, <italic toggle="yes">p</italic> &#x0003e; 0.05, R<sup>2</sup>: 0.99).</p><p id="P17">There was a statistically significant correlation between G022 prevalence and mean annual temperature (Fisher&#x02019;s exact, <italic toggle="yes">p</italic> &#x0003c; 0.05, R<sup>2</sup>: 0.94) (<xref rid="T3" ref-type="table">Table 3</xref>). A pairwise comparison with Bonferroni correction showed a statistically significant outcome between the 11.7&#x02013;13.3 &#x000b0;C (53&#x02013;56&#x000b0;F) zone and the 13.9&#x02013;15 &#x000b0;C (57&#x02013;59&#x000b0;F) zone, with a higher likelihood of G022 positive nymphs in the 11.7&#x02013;13.3 &#x000b0;C (53&#x02013;56&#x000b0;F) zone than the 13.9&#x02013;15 &#x000b0;C (57&#x02013;59&#x000b0;F) zone (<italic toggle="yes">p</italic> &#x0003c; 0.05). The remaining pairwise comparisons, including those examining the association between G022 prevalence in nymphs and mean annual temperature zones or mean annual relative humidity (R<sup>2</sup>: 0.84), did not produce statistically significant results (Fisher&#x02019;s exact, <italic toggle="yes">p</italic> &#x0003e; 0.05) (<xref rid="T4" ref-type="table">Table 4</xref>).</p><p id="P18">Comparing the prevalence of G022 in nymphs versus adults also led to a statistically significant result (Fisher&#x02019;s exact, <italic toggle="yes">p</italic> &#x0003c; 0.05). Overall, G022 positive nymphs were less likely to be found compared to G022 positive adults (OR, 0.60; 95 % CI = 36.5 %&#x02013;95.1 %, R<sup>2</sup>: 0.99).</p></sec><sec id="S11"><label>3.4.</label><title>Prevalence of R. tillamookensis in I. pacificus nymphs</title><p id="P19">Due to low sample volume, DNA samples from Sonoma and Santa Cruz counties were not screened for <italic toggle="yes">R. tillamookensis</italic>. Out of 440 nymphs tested, seven were qPCR positive, for an overall prevalence of 1.6 % (95 % CI = 0.8 %&#x02013;3.3 %). The prevalence ranged from a high of 4.9 % (95 % CI = 1.4 %&#x02013;16.1 %) in Humboldt County to a low of 0.82 % (95 % CI = 0.1 %&#x02013;4.5 %) in Napa County (<xref rid="T1" ref-type="table">Table 1</xref>). Analysis using Fisher&#x02019;s exact test indicated a lack of statistically significant association between <italic toggle="yes">R. tillamookensis</italic> infection in nymphs and either the county (R2: 0.08) or individual collection sites within the county (R<sup>2</sup>: 0.02) (Fisher&#x02019;s exact, <italic toggle="yes">p</italic> &#x0003e; 0.05).</p><p id="P20">When looking at the data by habitat type, <italic toggle="yes">R. tillamookensis</italic> had a prevalence of 6.9 % in montane hardwood conifer (95 % CI = 1.9 %&#x02013;22.0 %), 1.2 % (95 % CI = 0.5 %&#x02013;2.8 %) in coastal oak woodland, and 0 % (95 % CI = 0 %-79.4 %) in redwood. Statistical analysis determined that there was no statistically significant correlation between <italic toggle="yes">R. tillamookensis</italic> infection in nymphs and habitat type (R<sup>2</sup>: 0.90), mean annual temperature (R<sup>2</sup>: 0.97), or mean annual relative humidity (R<sup>2</sup>: 0.47) (Fisher&#x02019;s exact, <italic toggle="yes">p</italic> &#x0003e; 0.05) (<xref rid="T3" ref-type="table">Tables 3</xref> and <xref rid="T4" ref-type="table">4</xref>). Finally, none of the nymphs tested by qPCR were found to be coinfected with both G022 and <italic toggle="yes">R. tillamookensis</italic>.</p></sec></sec><sec id="S12"><label>4.</label><title>Discussion</title><p id="P21"><italic toggle="yes">Rickettsia</italic> species phylotype G022 and <italic toggle="yes">R. tillamookensis</italic>-infected <italic toggle="yes">I. pacificus</italic> nymphs were detected in multiple Northern California counties at an overall prevalence of 5.3 % and 1.6 %, respectively. G022-positive nymphs were detected in all but one county (Santa Cruz) while <italic toggle="yes">R. tillamookensis</italic> was detected in nymphs collected and tested from four counties. Comparison of G022 prevalence between adult and nymphal <italic toggle="yes">I. pacificus</italic> revealed that nymphs were less likely than adults of being infected with G022. The prevalence of G022 in adults vs nymphs varied significantly between Humboldt County (6.5 % in adults, 2.4 % in nymphs) and Contra Costa County (11.7 % in adults, 0.9 % in nymphs), compared to Napa County, where the prevalence was similar for both adults (12.9 %) and nymphs (12.3 %). This highlights distinct prevalence patterns between adult and nymphal stages in different collection areas.</p><p id="P22">G022 was originally identified in 2011 from <italic toggle="yes">I. pacificus</italic> adult ticks collected from the Napa Valley (<xref rid="R40" ref-type="bibr">Phan et al., 2011</xref>). Adult ticks in the current study were collected from counties that had G022 positive ticks in previous studies to increase the likelihood of finding additional positive ticks. Due to travel restrictions during the Covid-19 pandemic, most <italic toggle="yes">I. pacificus</italic> adults were collected from redwood habitat at the Green Diamond Resource Co. in Humboldt County. The calculated prevalence of G022 in adults in this study was 9.0 % (95 % CI = 7.2 %&#x02013;11.3 %) overall, higher than the previous study&#x02019;s 2 % (<xref rid="R5" ref-type="bibr">Cheng et al., 2013a</xref>) and similar to the prevalence of other well-known TBPs (<xref rid="R43" ref-type="bibr">Salkeld et al., 2021</xref>; <xref rid="R15" ref-type="bibr">Eshoo et al., 2015</xref>; <xref rid="R30" ref-type="bibr">MacDonald et al., 2017</xref>; <xref rid="R45" ref-type="bibr">Saunders and Kjemtrup, 2022</xref>; <xref rid="R20" ref-type="bibr">Holden et al., 2003</xref>; <xref rid="R27" ref-type="bibr">Lane et al., 2007</xref>, <xref rid="R28" ref-type="bibr">2010</xref>; <xref rid="R44" ref-type="bibr">Sambado et al., 2020</xref>). The variation in G022 prevalence among adult ticks observed between this study and previous studies may be attributed to differences in collection locations and the larger number of ticks sampled from a single county. Humboldt County, with a prevalence of 3.2 % in adult <italic toggle="yes">I. pacificus</italic>, recorded the second-highest G022 prevalence among the seven counties surveyed, compared to the average prevalence of 2.0 % reported in 2013 (<xref rid="R5" ref-type="bibr">Cheng et al., 2013a</xref>).</p><p id="P23">Analyzing adult prevalence data by county, habitat, mean annual temperature, and mean annual relative humidity yielded no statistically significant correlations. Most specimens were collected either on walking trails or adjacent to them, so the chance of human encounters is high. Dense oak woodlands pose a higher risk for <italic toggle="yes">I. pacificus</italic> encounters in Southern and Northern California (<xref rid="R30" ref-type="bibr">MacDonald et al., 2017</xref>; <xref rid="R27" ref-type="bibr">Lane et al., 2007</xref>; <xref rid="R8" ref-type="bibr">Eisen et al., 2003</xref>, <xref rid="R10" ref-type="bibr">2009</xref>, <xref rid="R11" ref-type="bibr">2010</xref>). Apart from being present in oak woodland habitat, coastal chaparral was found to be another habitat for potentially acquiring tick-borne disease agents (<xref rid="R43" ref-type="bibr">Salkeld et al., 2021</xref>).</p><p id="P24">The prevalence of <italic toggle="yes">R. tillamookensis</italic> was 1.6 % (95 % CI = 0.8 %&#x02013;3.3 %) in nymphal <italic toggle="yes">I. pacificus</italic>, which is similar to results of a recent study (<xref rid="R35" ref-type="bibr">Paddock et al., 2022</xref>). It is unsurprising that we detected G022 in <italic toggle="yes">I. pacificus</italic> nymphs since many rickettsiae are passed transstadially from one parasitic life stage to the next (Azad et al., 1998; <xref rid="R29" ref-type="bibr">Macaluso et al., 2002</xref>; <xref rid="R3" ref-type="bibr">Bonnet et al., 2017</xref>). Detecting G022 in questing nymphs indicates transstadial transmission from the larval stage. The overall prevalence was a modest 5.3 %, and all infected nymphs were derived from coastal oak woodlands. On the other hand, some significant differences were detected when the prevalence of G022 was compared among counties and mean annual temperatures. These findings could have future ramifications as climatic changes may reduce infection rates in certain areas while increasing them in others as habitat suitability shifts (<xref rid="R14" ref-type="bibr">Eisen et al., 2018</xref>, <xref rid="R12" ref-type="bibr">2016</xref>; <xref rid="R36" ref-type="bibr">Padgett and Lane, 2001</xref>).</p><p id="P25">Analyses of mean annual temperature and mean annual relative humidity did not reveal significant associations between G022 prevalence and adult <italic toggle="yes">I. pacificus</italic>. There was a statistically significant association between the prevalence of G022 in <italic toggle="yes">I. pacificus</italic> nymphs and mean annual temperature, but <italic toggle="yes">R. tillamookensis</italic> infection was not correlated with either variable. The 11.7&#x02013;13.3 &#x000b0;C (53&#x02013;56&#x000b0;F) zone had an increased likelihood of having G022 positive nymphs than the 13.9&#x02013;15 &#x000b0;C (57&#x02013;59&#x000b0;F) zone. These ranges coincide with some inland areas north of San Francisco and the San Francisco Bay Area, respectively.</p><p id="P26">Since ticks spend more than 90 % of their life cycles off-host, environmental conditions impact their development and survival. In the San Francisco Bay Area, for example, <italic toggle="yes">I. pacificus</italic> females oviposited at temperatures ranging between 6.5 &#x000b0;C and 29 &#x000b0;C, whereas egg development proceeded within a narrower range spanning 9 to 25 &#x000b0;C and hatching success was lower in exposed sites versus sheltered plots (<xref rid="R39" ref-type="bibr">Peavey and Lane, 1996</xref>).</p><p id="P27">One reason why there was a significant association between G022 in <italic toggle="yes">I. pacificus</italic> nymphs and temperature that was not seen in adults or with <italic toggle="yes">R. tillamookensis</italic> could be due to the climate sections map overlay that was used instead of recording exact microclimatic temperature measurements during each collection trip. While the initial temperature was taken on all collection trips, it was not as precise a method as previous studies that measured temperature at the soil surface (<xref rid="R27" ref-type="bibr">Lane et al., 2007</xref>; <xref rid="R36" ref-type="bibr">Padgett and Lane, 2001</xref>; <xref rid="R39" ref-type="bibr">Peavey and Lane, 1996</xref>). Moreover, relative humidity was not logged on field trips. Adopting the use of temperature and relative humidity data loggers (<xref rid="R27" ref-type="bibr">Lane et al., 2007</xref>) to track diurnal changes during collections would increase accuracy, thereby elucidating how microclimatic conditions may influence pathogen prevalence in <italic toggle="yes">I. pacificus</italic>.</p></sec><sec id="S13"><label>5.</label><title>Conclusions</title><p id="P28">Our study found that nymphal <italic toggle="yes">I. pacificus</italic> can be infected with G022, albeit at a lower prevalence than adults (nymphs: 5.3 %). Moreover, the detection of G022 in questing nymphs and adult ticks suggests that it can be passed transstadially by <italic toggle="yes">I. pacificus</italic> larvae and nymphs. The prevalence of <italic toggle="yes">R. tillamookensis</italic> in nymphal <italic toggle="yes">I. pacificus</italic> is consistent with previous findings (1.6 %). The low prevalence of G022 and <italic toggle="yes">R. tillamookensis</italic> among adults and nymphs suggests horizontal transmission occurs between ticks and their vertebrate hosts for these <italic toggle="yes">Rickettsia</italic> species. Despite the high sensitivity of qPCR, false negatives were possible if the DNA concentration in a given tick extract was too low. Further studies are needed to determine the vertebrate host and their pathogenicity to humans. This study also preliminarily investigated whether two climatic variables, mean annual temperature and mean annual relative humidity, may influence the prevalence of the <italic toggle="yes">Rickettsia</italic> species in <italic toggle="yes">I. pacificus</italic>. The only significant outcome was G022 infected nymphs had a higher likelihood of being in the 11.7&#x02013;13.3 &#x000b0;C zone than 13.9&#x02013;15 &#x000b0;C, which merits further study. Of six counties surveilled, Napa County had the highest prevalence of G022 positive nymphs, whereas Humboldt County had the highest prevalence of <italic toggle="yes">R. tillamookensis</italic>-positive nymphs. A potential limitation of this study was that it may have been underpowered due to the relatively low numbers of ticks collected from the various locations.</p></sec></body><back><ack id="S14"><title>Acknowledgements</title><p id="P29">ET expresses gratitude to Christopher D. Paddock and Sandor E. Karpathy for their expertise in detecting <italic toggle="yes">R. tillamookensis</italic> in nymphs, and to Robert S. Lane for his efforts in collecting nymphs from Mendocino County. ET also extends her thanks to Greg Hacker, Paul Bourdeau, Damien Clausen, Richard Brown, Allison Bronson, Jeremy Corrigan, and Lorraine Fuller for their technical and professional support of her research. Additionally, ET acknowledges the generous funding provided by Jason Ramos, the D.C. Chairman of the Blue Lake Rancheria Tribal Gaming Commission. ET gratefully acknowledges the following tick-collector volunteers who helped make this study possible: Jason Aren Avon, Chelsea Brous, Ashleigh Kilgore, Jonathan Belden, Samuel Cohen, Maddy Hobart, Brandon Garza, Theodorus Bindels, Maya Noble, Laura Almeida, Elsa Balfe, and Mariko Yasuda. The authors thank the Bureau of Land Management and Green Diamond Resource Company for permission to collect ticks on their properties in Humboldt County. This research was funded by the Pacific Southwest Center of Excellence in Vector-Borne Disease grant awarded to Erin Trent and National Institutes of Health grant 1R16AI167834&#x02013;01 awarded to Jianmin Zhong, PhD.</p></ack><fn-group><fn id="FN1"><label>&#x02606;</label><p id="P31">Publication Policy Disclaimer: The findings and conclusions in this article are those of the authors and do not necessarily represent the views or opinions of the California Department of Public Health or the California Health and Human Services Agency.</p></fn><fn fn-type="COI-statement" id="FN2"><p id="P32">Declaration of competing interest</p><p id="P33">The authors declare that there is no conflict of interest in this study.</p></fn><fn id="FN3"><p id="P34">CRediT authorship contribution statement</p><p id="P35"><bold>Erin Trent:</bold> Writing &#x02013; review &#x00026; editing, Writing &#x02013; original draft, Visualization, Validation, Project administration, Methodology, Investigation, Funding acquisition, Formal analysis, Data curation. <bold>Andrea Swei:</bold> Writing &#x02013; review &#x00026; editing, Resources, Investigation. <bold>Tina Feiszli:</bold> Writing &#x02013; review &#x00026; editing, Resources, Project administration, Methodology, Investigation. <bold>Megan E.M. Saunders:</bold> Writing &#x02013; review &#x00026; editing, Resources, Methodology, Investigation. <bold>Jianmin Zhong:</bold> Writing &#x02013; review &#x00026; editing, Visualization, Validation, Supervision, Project administration, Methodology, Investigation, Funding acquisition, Formal analysis, Data curation, Conceptualization.</p></fn></fn-group><sec sec-type="data-availability" id="S15"><title>Data availability</title><p id="P30">Data will be made available on request.</p></sec><ref-list><title>References</title><ref id="R1"><mixed-citation publication-type="journal"><name><surname>Azad</surname><given-names>AF</given-names></name>, <name><surname>Beard</surname><given-names>CB</given-names></name>, <year>1998</year>. <article-title>Rickettsial pathogens and their arthropod vectors</article-title>. <source>Emerg. Infect. Dis</source>. <volume>4</volume>. <pub-id pub-id-type="doi">10.3201/eid0402.980205</pub-id>.</mixed-citation></ref><ref id="R2"><mixed-citation publication-type="journal"><name><surname>Binetruy</surname><given-names>F</given-names></name>, <name><surname>Dupraz</surname><given-names>M</given-names></name>, <name><surname>Buysse</surname><given-names>M</given-names></name>, <name><surname>Duron</surname><given-names>O</given-names></name>, <year>2019</year>. <article-title>Surface sterilization methods impact measures of internal microbial diversity in ticks.</article-title>
<source>Parasit Vectors</source>
<volume>12</volume>. <pub-id pub-id-type="doi">10.1186/s13071-019-3517-5</pub-id>.</mixed-citation></ref><ref id="R3"><mixed-citation publication-type="journal"><name><surname>Bonnet</surname><given-names>SI</given-names></name>, <name><surname>Binetruy</surname><given-names>F</given-names></name>, <name><surname>Hern&#x000e1;ndez-Jargu&#x000ed;n</surname><given-names>AM</given-names></name>, <name><surname>Duron</surname><given-names>O</given-names></name>, <year>2017</year>. <article-title>The tick microbiome: why non-pathogenic microorganisms matter in tick biology and pathogen transmission</article-title>. <source>Front. Cell. Infect. Microbiol</source>. <volume>7</volume>. <pub-id pub-id-type="doi">10.3389/fcimb.2017.00236</pub-id>.</mixed-citation></ref><ref id="R4"><mixed-citation publication-type="webpage"><collab>Centers for Disease Control and Prevention</collab>, <year>2019</year>. <source>Travel-related Infections and Diseases</source>
<ext-link xlink:href="https://wwwnc.cdc.gov/travel/yellowbook/2020/travel-related-infectious-diseases/rickettsial-including-spotted-fever-and-typhus-fever-rickettsioses-scrub-typhus-anaplasmosis-and-ehr#table419" ext-link-type="uri">https://wwwnc.cdc.gov/travel/yellowbook/2020/travel-related-infectious-diseases/rickettsial-including-spotted-fever-and-typhus-fever-rickettsioses-scrub-typhus-anaplasmosis-and-ehr#table419</ext-link> (accessed <date-in-citation>12 February 2020</date-in-citation>).</mixed-citation></ref><ref id="R5"><mixed-citation publication-type="journal"><name><surname>Cheng</surname><given-names>D</given-names></name>, <name><surname>Vigil</surname><given-names>K</given-names></name>, <name><surname>Schanes</surname><given-names>P</given-names></name>, <name><surname>Brown</surname><given-names>RN</given-names></name>, <name><surname>Zhong</surname><given-names>J</given-names></name>, <year>2013a</year>. <article-title>Prevalence and burden of two rickettsial phylotypes (G021 and G022) in <italic toggle="yes">Ixodes pacificus</italic> from California by real-time quantitative PCR</article-title>. <source>Vector Borne. Zoonotic Dis</source>. <volume>4</volume>, <fpage>280</fpage>&#x02013;<lpage>287</lpage>. <pub-id pub-id-type="doi">10.1016/j.ttbdis.2012.12.005</pub-id>.</mixed-citation></ref><ref id="R6"><mixed-citation publication-type="journal"><name><surname>Cheng</surname><given-names>D</given-names></name>, <name><surname>Lane</surname><given-names>RS</given-names></name>, <name><surname>Moore</surname><given-names>BD</given-names></name>, <name><surname>Zhong</surname><given-names>J</given-names></name>, <year>2013b</year>. <article-title>Host blood meal-dependent growth ensures transovarial transmission and transstadial passage of <italic toggle="yes">Rickettsia</italic> sp. Phylotype G021 in the western black-legged tick (<italic toggle="yes">Ixodes pacificus</italic>).</article-title>
<source>Ticks Tick. Borne. Dis</source>
<volume>4</volume>, <fpage>421</fpage>&#x02013;<lpage>426</lpage>.<pub-id pub-id-type="pmid">23876278</pub-id>
</mixed-citation></ref><ref id="R7"><mixed-citation publication-type="journal"><name><surname>Clover</surname><given-names>JR</given-names></name>, <name><surname>Lane</surname><given-names>RS</given-names></name>, <year>1995</year>. <article-title>Evidence implicating nymphal <italic toggle="yes">Ixodes pacificus</italic> (Acari: ixodidae) in the epidemiology of Lyme disease in California</article-title>. <source>Am. J. Trop. Med. Hyg</source>. <volume>53</volume>, <fpage>237</fpage>&#x02013;<lpage>240</lpage>.<pub-id pub-id-type="pmid">7573703</pub-id>
</mixed-citation></ref><ref id="R8"><mixed-citation publication-type="journal"><name><surname>Eisen</surname><given-names>RJ</given-names></name>, <name><surname>Eisen</surname><given-names>L</given-names></name>, <name><surname>Castro</surname><given-names>MB</given-names></name>, <name><surname>Lane</surname><given-names>RS</given-names></name>, <year>2003</year>. <article-title>Environmentally related variability in risk of exposure to Lyme disease spirochetes in northern California: effect of climate conditions and habitat type</article-title>. <source>Environ. Entomol</source>. <volume>32</volume>, <fpage>1010</fpage>&#x02013;<lpage>1018</lpage>.</mixed-citation></ref><ref id="R9"><mixed-citation publication-type="journal"><name><surname>Eisen</surname><given-names>L</given-names></name>, <name><surname>Eisen</surname><given-names>RJ</given-names></name>, <name><surname>Lane</surname><given-names>RS</given-names></name>, <year>2006</year>. <article-title>Geographical distribution patterns and habitat suitability models for presence of host-seeking Ixodid ticks in dense woodlands of Mendocino County</article-title>. <source>California. J. Med. Entomol</source>. <volume>43</volume>, <fpage>415</fpage>&#x02013;<lpage>427</lpage>.<pub-id pub-id-type="pmid">16619628</pub-id>
</mixed-citation></ref><ref id="R10"><mixed-citation publication-type="journal"><name><surname>Eisen</surname><given-names>L</given-names></name>, <name><surname>Eisen</surname><given-names>RJ</given-names></name>, <name><surname>Mun</surname><given-names>J</given-names></name>, <name><surname>Salkeld</surname><given-names>DJ</given-names></name>, <name><surname>Lane</surname><given-names>RS</given-names></name>, <year>2009</year>. <article-title>Transmission cycles of <italic toggle="yes">Borrelia burgdorferi</italic> and <italic toggle="yes">B. bissettii</italic> in relation to habitat type in northwestern California</article-title>. <source>J. Vector. Ecol</source>. <volume>34</volume>, <fpage>81</fpage>&#x02013;<lpage>91</lpage>. <pub-id pub-id-type="doi">10.3376/038.034.0110</pub-id>.<pub-id pub-id-type="pmid">20514140</pub-id>
</mixed-citation></ref><ref id="R11"><mixed-citation publication-type="journal"><name><surname>Eisen</surname><given-names>RJ</given-names></name>, <name><surname>Eisen</surname><given-names>L</given-names></name>, <name><surname>Girard</surname><given-names>YA</given-names></name>, <name><surname>Fedorova</surname><given-names>N</given-names></name>, <name><surname>Mun</surname><given-names>J</given-names></name>, <name><surname>Slikas</surname><given-names>B</given-names></name>, <name><surname>Leonhard</surname><given-names>S</given-names></name>, <name><surname>Kitron</surname><given-names>U</given-names></name>, <name><surname>Lane</surname><given-names>RS</given-names></name>, <year>2010</year>. <article-title>A spatially-explicit model of acarological risk of exposure to <italic toggle="yes">Borrelia burgdorferi</italic>-infected <italic toggle="yes">Ixodes pacificus</italic> nymphs in northwestern California based on woodland type, temperature, and water vapor</article-title>. <source>Ticks Tick. Borne Dis</source>
<volume>1</volume>, <fpage>35</fpage>&#x02013;<lpage>43</lpage>. <pub-id pub-id-type="doi">10.1016/j.ttbdis.2009.12.002</pub-id>.<pub-id pub-id-type="pmid">20532183</pub-id>
</mixed-citation></ref><ref id="R12"><mixed-citation publication-type="journal"><name><surname>Eisen</surname><given-names>RJ</given-names></name>, <name><surname>Eisen</surname><given-names>L</given-names></name>, <name><surname>Beard</surname><given-names>CB</given-names></name>, <year>2016</year>. <article-title>County-scale distribution of <italic toggle="yes">Ixodes scapularis</italic> and <italic toggle="yes">Ixodes pacificus</italic> (Acari: ixodidae) in the continental United States</article-title>. <source>J. Med. Entomol</source>. <volume>53</volume>, <fpage>349</fpage>&#x02013;<lpage>386</lpage>. <pub-id pub-id-type="doi">10.1093/jme/tjv237</pub-id>.<pub-id pub-id-type="pmid">26783367</pub-id>
</mixed-citation></ref><ref id="R13"><mixed-citation publication-type="journal"><name><surname>Eisen</surname><given-names>RJ</given-names></name>, <name><surname>Kugeler</surname><given-names>KJ</given-names></name>, <name><surname>Eisen</surname><given-names>L</given-names></name>, <name><surname>Beard</surname><given-names>CB</given-names></name>, <name><surname>Paddock</surname><given-names>CD</given-names></name>, <year>2017</year>. <article-title>Tick-borne zoonoses in the United States: persistent and emerging threats to human health</article-title>. <source>ILAR J</source>. <volume>58</volume>, <fpage>319</fpage>&#x02013;<lpage>335</lpage>. <pub-id pub-id-type="doi">10.1093/ilar/ilx005</pub-id>.<pub-id pub-id-type="pmid">28369515</pub-id>
</mixed-citation></ref><ref id="R14"><mixed-citation publication-type="journal"><name><surname>Eisen</surname><given-names>RJ</given-names></name>, <name><surname>Feirer</surname><given-names>S</given-names></name>, <name><surname>Padgett</surname><given-names>KA</given-names></name>, <name><surname>Hahn</surname><given-names>MB</given-names></name>, <name><surname>Monaghan</surname><given-names>AJ</given-names></name>, <name><surname>Kramer</surname><given-names>VL</given-names></name>, <name><surname>Lane</surname><given-names>RS</given-names></name>, <name><surname>Kelly</surname><given-names>M</given-names></name>, <year>2018</year>. <article-title>Modeling climate suitability of the western blacklegged tick in California</article-title>. <source>J. Med. Entomol</source>. <volume>55</volume>, <fpage>1133</fpage>&#x02013;<lpage>1142</lpage>. <pub-id pub-id-type="doi">10.1093/jme/tjy060</pub-id>.<pub-id pub-id-type="pmid">29697837</pub-id>
</mixed-citation></ref><ref id="R15"><mixed-citation publication-type="journal"><name><surname>Eshoo</surname><given-names>MW</given-names></name>, <name><surname>Carolan</surname><given-names>HE</given-names></name>, <name><surname>Massire</surname><given-names>C</given-names></name>, <name><surname>Chou</surname><given-names>DM</given-names></name>, <name><surname>Crowder</surname><given-names>CD</given-names></name>, <name><surname>Rounds</surname><given-names>MA</given-names></name>, <name><surname>Phillipson</surname><given-names>CA</given-names></name>, <name><surname>Schutzer</surname><given-names>SE</given-names></name>, <name><surname>Ecker</surname><given-names>DJ</given-names></name>, <year>2015</year>. <article-title>Survey of <italic toggle="yes">Ixodes pacificus</italic> ticks in California reveals a diversity of microorganisms and a novel and widespread <italic toggle="yes">Anaplasmataceae</italic> species</article-title>. <source>PLoS One</source>
<volume>10</volume>, <fpage>e0135828</fpage>. <pub-id pub-id-type="doi">10.1371/journal.pone.0135828</pub-id>.<pub-id pub-id-type="pmid">26375033</pub-id>
</mixed-citation></ref><ref id="R16"><mixed-citation publication-type="journal"><name><surname>Furman</surname><given-names>DP</given-names></name>, <name><surname>Loomis</surname><given-names>EC</given-names></name>, <year>1984</year>. <article-title>The ticks of California (Acari: ixodida).</article-title>
<source>Bull. California Insect Survey</source>. <volume>25</volume>, <fpage>1</fpage>&#x02013;<lpage>239</lpage>.</mixed-citation></ref><ref id="R17"><mixed-citation publication-type="journal"><name><surname>Gauthier</surname><given-names>DT</given-names></name>, <name><surname>Karpathy</surname><given-names>SE</given-names></name>, <name><surname>Grizzard</surname><given-names>SL</given-names></name>, <name><surname>Batra</surname><given-names>D</given-names></name>, <name><surname>Rowe</surname><given-names>LA</given-names></name>, <name><surname>Paddock</surname><given-names>CD</given-names></name>, <year>2021</year>. <article-title>Characterization of a novel transitional group <italic toggle="yes">Rickettsia</italic> species (<italic toggle="yes">Rickettsia tillamookensis</italic> sp. nov.) from the western black-legged tick, <italic toggle="yes">Ixodes pacificus</italic></article-title>. <source>Int. J. Syst. Evol. Microbiol</source>. <volume>71</volume>, <fpage>004880</fpage>. <pub-id pub-id-type="doi">10.1099/ijsem.0.004880</pub-id>.<pub-id pub-id-type="pmid">34214027</pub-id>
</mixed-citation></ref><ref id="R18"><mixed-citation publication-type="journal"><name><surname>Hahn</surname><given-names>MB</given-names></name>, <name><surname>Feirer</surname><given-names>S</given-names></name>, <name><surname>Monaghan</surname><given-names>AJ</given-names></name>, <name><surname>Lane</surname><given-names>RS</given-names></name>, <name><surname>Eisen</surname><given-names>RJ</given-names></name>, <name><surname>Padgett</surname><given-names>KA</given-names></name>, <name><surname>Kelly</surname><given-names>M</given-names></name>, <year>2021</year>. <article-title>Modeling future climate suitability for the western blacklegged tick, Ixodes pacificus, in California with an emphasis on land access and ownership.</article-title>
<source>Ticks Tick Borne Dis</source>
<volume>12</volume>. <pub-id pub-id-type="doi">10.1016/j.ttbdis.2021.101789</pub-id>.</mixed-citation></ref><ref id="R19"><mixed-citation publication-type="journal"><name><surname>Hahn</surname><given-names>MB</given-names></name>, <name><surname>Jarnevich</surname><given-names>CS</given-names></name>, <name><surname>Monaghan</surname><given-names>AJ</given-names></name>, <name><surname>Eisen</surname><given-names>RJ</given-names></name>, <year>2016</year>. <article-title>Modeling the geographic distribution of <italic toggle="yes">Ixodes scapularis</italic> and <italic toggle="yes">Ixodes pacificus</italic> (Acari: ixodidae) in the contiguous United States</article-title>. <source>J. Med. Entomol</source>. <volume>53</volume>, <fpage>1176</fpage>&#x02013;<lpage>1191</lpage>.<pub-id pub-id-type="pmid">27282813</pub-id>
</mixed-citation></ref><ref id="R20"><mixed-citation publication-type="journal"><name><surname>Holden</surname><given-names>K</given-names></name>, <name><surname>Boothby</surname><given-names>JT</given-names></name>, <name><surname>Anand</surname><given-names>S</given-names></name>, <name><surname>Massung</surname><given-names>RF</given-names></name>, <year>2003</year>. <article-title>Detection of <italic toggle="yes">Borrelia burgdorferi, Ehrlichia chaffeensis,</italic> and <italic toggle="yes">Anaplasma phagocytophilum</italic> in ticks (Acari: ixodidae) from a coastal region of California</article-title>. <source>J. Med. Entomol</source>. <volume>40</volume>, <fpage>534</fpage>&#x02013;<lpage>539</lpage>.<pub-id pub-id-type="pmid">14680123</pub-id>
</mixed-citation></ref><ref id="R21"><mixed-citation publication-type="journal"><name><surname>Hughes</surname><given-names>LE</given-names></name>, <name><surname>Clifford</surname><given-names>CM</given-names></name>, <name><surname>Gresbrink</surname><given-names>R</given-names></name>, <name><surname>Thomas</surname><given-names>LA</given-names></name>, <name><surname>Keirans</surname><given-names>JE</given-names></name>, <year>1976</year>. <article-title>Isolation of a spotted fever group <italic toggle="yes">Rickettsia</italic> from the Pacific coast tick, <italic toggle="yes">Ixodes pacificus</italic>, in Oregon</article-title>. <source>Am. J. Trop. Med. Hyg</source>. <volume>25</volume>, <fpage>513</fpage>&#x02013;<lpage>516</lpage>.<pub-id pub-id-type="pmid">937637</pub-id>
</mixed-citation></ref><ref id="R22"><mixed-citation publication-type="journal"><name><surname>Hunter</surname><given-names>DJ</given-names></name>, <name><surname>Torkelson</surname><given-names>JL</given-names></name>, <name><surname>Bodnar</surname><given-names>J</given-names></name>, <name><surname>Mortazavi</surname><given-names>B</given-names></name>, <name><surname>Laurent</surname><given-names>T</given-names></name>, <name><surname>Deason</surname><given-names>J</given-names></name>, <name><surname>Thephavongsa</surname><given-names>K</given-names></name>, <name><surname>Zhong</surname><given-names>J</given-names></name>, <year>2015</year>. <article-title>The <italic toggle="yes">Rickettsia</italic> endosymbiont of <italic toggle="yes">Ixodes pacificus</italic> contains all genes of <italic toggle="yes">De Novo</italic> folate biosynthesis</article-title>. <source>PLoS One</source>
<volume>10</volume>, <fpage>1</fpage>&#x02013;<lpage>15</lpage>.</mixed-citation></ref><ref id="R23"><mixed-citation publication-type="journal"><name><surname>Kuo</surname><given-names>MM</given-names></name>, <name><surname>Lane</surname><given-names>RS</given-names></name>, <name><surname>Giclas</surname><given-names>PC</given-names></name>, <year>2000</year>. <article-title>A comparative study of the mammalian and reptilian alternative pathway of complement-mediated killing of the Lyme disease spirochete (<italic toggle="yes">Borrelia burgdorferi</italic>).</article-title>
<source>J. Parasitol</source>. <volume>86</volume>, <fpage>1223</fpage>&#x02013;<lpage>1228</lpage>.<pub-id pub-id-type="pmid">11191895</pub-id>
</mixed-citation></ref><ref id="R24"><mixed-citation publication-type="journal"><name><surname>Lane</surname><given-names>RS</given-names></name>, <name><surname>Philip</surname><given-names>RN</given-names></name>, <name><surname>Casper</surname><given-names>EA</given-names></name>, <year>1981a</year>. <article-title>Ecology of tick-borne agents in California: further observations on rickettsiae.</article-title>
<source>Rickettsiae Rickettsial Diseases</source>
<fpage>575</fpage>&#x02013;<lpage>584</lpage>.</mixed-citation></ref><ref id="R25"><mixed-citation publication-type="journal"><name><surname>Lane</surname><given-names>RS</given-names></name>, <name><surname>Emmons</surname><given-names>RW</given-names></name>, <name><surname>Dondero</surname><given-names>DV</given-names></name>, <name><surname>Nelson</surname><given-names>BC</given-names></name>, <year>1981b</year>. <article-title>Ecology of tick-borne agents in California</article-title>. <source>Am. J. Trop. Med. Hyg</source>. <volume>30</volume>, <fpage>239</fpage>&#x02013;<lpage>252</lpage>. <pub-id pub-id-type="doi">10.4269/ajtmh.1981.30.239</pub-id>.<pub-id pub-id-type="pmid">7212168</pub-id>
</mixed-citation></ref><ref id="R26"><mixed-citation publication-type="journal"><name><surname>Lane</surname><given-names>RS</given-names></name>, <name><surname>Quistad</surname><given-names>GB</given-names></name>, <year>1998</year>. <article-title>Borreliacidal factor in the blood of the western fence lizard (<italic toggle="yes">Sceloporus occidentalis</italic>).</article-title>
<source>J. Parasitol</source>. <volume>84</volume>, <fpage>29</fpage>&#x02013;<lpage>34</lpage>.<pub-id pub-id-type="pmid">9488334</pub-id>
</mixed-citation></ref><ref id="R27"><mixed-citation publication-type="journal"><name><surname>Lane</surname><given-names>RS</given-names></name>, <name><surname>Mun</surname><given-names>J</given-names></name>, <name><surname>Perib&#x000e1;&#x000f1;ez</surname><given-names>MA</given-names></name>, <name><surname>Stubbs</surname><given-names>HA</given-names></name>, <year>2007</year>. <article-title>Host-seeking behavior of <italic toggle="yes">Ixodes pacificus</italic> (Acari: ixodidae) nymphs in relation to environmental parameters in dense-woodland and woodland-grass habitats</article-title>. <source>J. Vector Ecol</source>. <volume>32</volume>, <fpage>342</fpage>&#x02013;<lpage>357</lpage>.<pub-id pub-id-type="pmid">18260527</pub-id>
</mixed-citation></ref><ref id="R28"><mixed-citation publication-type="journal"><name><surname>Lane</surname><given-names>RS</given-names></name>, <name><surname>Mun</surname><given-names>J</given-names></name>, <name><surname>Perib&#x000e1;&#x000f1;ez</surname><given-names>MA</given-names></name>, <name><surname>Fedorova</surname><given-names>N</given-names></name>, <year>2010</year>. <article-title>Differences in prevalence of <italic toggle="yes">Borrelia burgdorferi</italic> and <italic toggle="yes">Anaplasma</italic> spp. infection among host-seeking <italic toggle="yes">Dermacentor occidentalis, Ixodes pacificus</italic>, and <italic toggle="yes">Ornithodoros coriaceus</italic> ticks in northwestern California</article-title>. <source>Ticks Tick Borne Dis</source>
<volume>1</volume>, <fpage>159</fpage>&#x02013;<lpage>167</lpage>. <pub-id pub-id-type="doi">10.1016/j.ttbdis.2010.09.004</pub-id>.<pub-id pub-id-type="pmid">21359090</pub-id>
</mixed-citation></ref><ref id="R29"><mixed-citation publication-type="journal"><name><surname>Macaluso</surname><given-names>KR</given-names></name>, <name><surname>Sonenshine</surname><given-names>DE</given-names></name>, <name><surname>Ceraul</surname><given-names>SM</given-names></name>, <name><surname>Azad</surname><given-names>AF</given-names></name>, <year>2002</year>. <article-title>Rickettsial infection in <italic toggle="yes">Dermacentor variabilis</italic> (Acari: ixodidae) inhibits transovarial transmission of a second <italic toggle="yes">Rickettsia</italic></article-title>. <source>J. Med. Entomol</source>. <volume>36</volume>, <fpage>809</fpage>&#x02013;<lpage>813</lpage>.</mixed-citation></ref><ref id="R30"><mixed-citation publication-type="journal"><name><surname>MacDonald</surname><given-names>AJ</given-names></name>, <name><surname>Hyon</surname><given-names>DW</given-names></name>, <name><surname>Brewington III</surname><given-names>JB</given-names></name>, <name><surname>O&#x02019;Connor</surname><given-names>K</given-names></name>, <name><surname>Swei</surname><given-names>A</given-names></name>, <name><surname>Briggs</surname><given-names>C</given-names></name>, <year>2017</year>. <article-title>Lyme disease risk in southern California: abiotic and environmental drivers of <italic toggle="yes">Ixodes pacificus</italic> (Acari: ixodidae) density and infection prevalence with <italic toggle="yes">Borrelia burgdorferi</italic></article-title>. <source>Parasites Vectors</source>
<volume>10</volume>. <pub-id pub-id-type="doi">10.1186/s13071-016-1938-y</pub-id>.</mixed-citation></ref><ref id="R31"><mixed-citation publication-type="journal"><name><surname>MacDonald</surname><given-names>AJ</given-names></name>, <year>2018</year>. <article-title>Abiotic and habitat drivers of tick vector abundance, diversity, phenology, and human encounter risk in southern California</article-title>. <source>PLoS One</source>
<volume>13</volume>, <fpage>e0201665</fpage>. <pub-id pub-id-type="doi">10.1371/journal.pone.0201665</pub-id>.<pub-id pub-id-type="pmid">30063752</pub-id>
</mixed-citation></ref><ref id="R32"><mixed-citation publication-type="journal"><name><surname>Maina</surname><given-names>AN</given-names></name>, <name><surname>Luce-Fedrow</surname><given-names>A</given-names></name>, <name><surname>Omulo</surname><given-names>S</given-names></name>, <name><surname>Hang</surname><given-names>J</given-names></name>, <name><surname>Chan</surname><given-names>TC</given-names></name>, <name><surname>Ade</surname><given-names>F</given-names></name>, <name><surname>Jima</surname><given-names>DD</given-names></name>, <name><surname>Ogola</surname><given-names>E</given-names></name>, <name><surname>Ge</surname><given-names>H</given-names></name>, <name><surname>Breiman</surname><given-names>RF</given-names></name>, <name><surname>Njenga</surname><given-names>MK</given-names></name>, <name><surname>Richards</surname><given-names>AL</given-names></name>, <year>2016</year>. <article-title>Isolation and characterization of a novel <italic toggle="yes">Rickettsia</italic> species (<italic toggle="yes">Rickettsia asembonensis</italic> sp. nov.) obtained from cat fleas (<italic toggle="yes">Ctenocephalides felis</italic>).</article-title>
<source>Int. J. Syst. Evol. Microbiol</source>. <volume>66</volume>, <fpage>4512</fpage>&#x02013;<lpage>4517</lpage>. <pub-id pub-id-type="doi">10.1099/ijsem.0.001382</pub-id>.<pub-id pub-id-type="pmid">27506201</pub-id>
</mixed-citation></ref><ref id="R33"><mixed-citation publication-type="journal"><name><surname>Maina</surname><given-names>AN</given-names></name>, <name><surname>Jiang</surname><given-names>J</given-names></name>, <name><surname>Luce-Fedrow</surname><given-names>A</given-names></name>, <name><surname>John</surname><given-names>St., H.K.</given-names></name>, <name><surname>Farris</surname><given-names>CM</given-names></name>, <name><surname>Richards</surname><given-names>AL</given-names></name>, <year>2019</year>. <article-title>Worldwide presence and features of flea-borne <italic toggle="yes">Rickettsia asembonensis</italic></article-title>. <source>Front. Vet. Sci</source>. <volume>5</volume>. <pub-id pub-id-type="doi">10.3389/2Ffvets.2018.00334</pub-id>.</mixed-citation></ref><ref id="R34"><mixed-citation publication-type="journal"><name><surname>Mayer</surname><given-names>KE</given-names></name>, <name><surname>Laudenslayer</surname><given-names>WF</given-names></name>, <year>1988</year>. <article-title>A Guide to Wildlife Habitats of California.</article-title>
<source>State of California Resources Agency, Department of Fish and Game, Sacramento, California</source>
<ext-link xlink:href="https://wildlife.ca.gov/Data/CWHR/Wildlife-Habitats" ext-link-type="uri">https://wildlife.ca.gov/Data/CWHR/Wildlife-Habitats</ext-link> (accessed <date-in-citation>24 March 2022</date-in-citation>).</mixed-citation></ref><ref id="R35"><mixed-citation publication-type="journal"><name><surname>Paddock</surname><given-names>CD</given-names></name>, <name><surname>Slater</surname><given-names>K</given-names></name>, <name><surname>Swei</surname><given-names>A</given-names></name>, <name><surname>Zambrano</surname><given-names>ML</given-names></name>, <name><surname>Kleinjan</surname><given-names>JE</given-names></name>, <name><surname>Padgett</surname><given-names>KA</given-names></name>, <name><surname>Saunders</surname><given-names>MEM</given-names></name>, <name><surname>Andrews</surname><given-names>ES</given-names></name>, <name><surname>Trent</surname><given-names>E</given-names></name>, <name><surname>Zhong</surname><given-names>J</given-names></name>, <name><surname>Sambado</surname><given-names>S</given-names></name>, <name><surname>Goldsmith</surname><given-names>CS</given-names></name>, <name><surname>Pascoe</surname><given-names>EL</given-names></name>, <name><surname>Foley</surname><given-names>J</given-names></name>, <name><surname>Lane</surname><given-names>RS</given-names></name>, <name><surname>Karpathy</surname><given-names>SE</given-names></name>, <year>2022</year>. <article-title>Detection and isolation of <italic toggle="yes">Rickettsia tillamookensis</italic> (Rickettsiales: rickettsiaceae) from <italic toggle="yes">Ixodes pacificus</italic> (Acari: ixodidae) from multiple regions of California</article-title>. <source>J. Med. Entomol</source>. <volume>59</volume>, <fpage>1404</fpage>&#x02013;<lpage>1412</lpage>. <pub-id pub-id-type="doi">10.1093/jme/tjac038</pub-id>.<pub-id pub-id-type="pmid">35468215</pub-id>
</mixed-citation></ref><ref id="R36"><mixed-citation publication-type="journal"><name><surname>Padgett</surname><given-names>KA</given-names></name>, <name><surname>Lane</surname><given-names>RS</given-names></name>, <year>2001</year>. <article-title>Life cycle of <italic toggle="yes">Ixodes pacificus</italic> (Acari: ixodidae): timing of developmental processes under field and laboratory conditions</article-title>. <source>J. Med. Entomol</source>. <volume>38</volume>, <fpage>684</fpage>&#x02013;<lpage>693</lpage>. <pub-id pub-id-type="doi">10.1603/0022-2585-38.5.684</pub-id>.<pub-id pub-id-type="pmid">11580041</pub-id>
</mixed-citation></ref><ref id="R37"><mixed-citation publication-type="journal"><name><surname>Padgett</surname><given-names>KA</given-names></name>, <name><surname>Bonilla</surname><given-names>DL</given-names></name>, <year>2011</year>. <article-title>Novel exposure sites for nymphal <italic toggle="yes">Ixodes pacificus</italic> within picnic areas</article-title>. <source>Ticks Tick Borne Dis</source>
<volume>2</volume>, <fpage>191</fpage>&#x02013;<lpage>195</lpage>. <pub-id pub-id-type="doi">10.1016/j.ttbdis.2011.07.002</pub-id>.<pub-id pub-id-type="pmid">22108011</pub-id>
</mixed-citation></ref><ref id="R38"><mixed-citation publication-type="journal"><name><surname>Parola</surname><given-names>P</given-names></name>, <name><surname>Paddock</surname><given-names>CD</given-names></name>, <name><surname>Socolovschi</surname><given-names>C</given-names></name>, <name><surname>Labruna</surname><given-names>MB</given-names></name>, <name><surname>Mediannikov</surname><given-names>O</given-names></name>, <name><surname>Kernif</surname><given-names>T</given-names></name>, <name><surname>Abdad</surname><given-names>MY</given-names></name>, <name><surname>Stenos</surname><given-names>J</given-names></name>, <name><surname>Bitam</surname><given-names>I</given-names></name>, <name><surname>Fournier</surname><given-names>P-E</given-names></name>, <name><surname>Raoult</surname><given-names>D</given-names></name>, <year>2013</year>. <article-title>Update on tick-borne rickettsioses around the world: a geographic approach</article-title>. <source>Clin. Microbiol. Rev</source>. <volume>26</volume>, <fpage>657</fpage>&#x02013;<lpage>702</lpage>. <pub-id pub-id-type="doi">10.1128/CMR.00032-13</pub-id>.<pub-id pub-id-type="pmid">24092850</pub-id>
</mixed-citation></ref><ref id="R39"><mixed-citation publication-type="journal"><name><surname>Peavey</surname><given-names>CA</given-names></name>, <name><surname>Lane</surname><given-names>RS</given-names></name>, <year>1996</year>. <article-title>Field and laboratory studies on the timing of oviposition and hatching of the western blacklegged tick, <italic toggle="yes">Ixodes pacificus</italic> (Acari: ixodidae).</article-title>
<source>Exp. Appl. Acarol</source>. <volume>20</volume>, <fpage>695</fpage>&#x02013;<lpage>711</lpage>.<pub-id pub-id-type="pmid">9004494</pub-id>
</mixed-citation></ref><ref id="R40"><mixed-citation publication-type="journal"><name><surname>Phan</surname><given-names>JN</given-names></name>, <name><surname>Lu</surname><given-names>CR</given-names></name>, <name><surname>Bender</surname><given-names>WG</given-names></name>, <name><surname>Smoak III</surname><given-names>RM</given-names></name>, <name><surname>Zhong</surname><given-names>J</given-names></name>, <year>2011</year>. <article-title>Molecular detection and identification of <italic toggle="yes">Rickettsia</italic> Species in <italic toggle="yes">Ixodes pacificus</italic> in California</article-title>. <source>Vector Borne Zoonotic Dis</source>. <volume>11</volume>, <fpage>957</fpage>&#x02013;<lpage>961</lpage>. <pub-id pub-id-type="doi">10.1089/vbz.2010.0077</pub-id>.<pub-id pub-id-type="pmid">21413886</pub-id>
</mixed-citation></ref><ref id="R41"><mixed-citation publication-type="journal"><name><surname>Philip</surname><given-names>RN</given-names></name>, <name><surname>Lane</surname><given-names>RS</given-names></name>, <name><surname>Casper</surname><given-names>EA</given-names></name>, <year>1981</year>. <article-title>Serotypes of tick-borne spotted fever group rickettsiae from western California</article-title>. <source>Am. J. Trop. Med. Hyg</source>. <volume>30</volume>, <fpage>722</fpage>&#x02013;<lpage>727</lpage>.<pub-id pub-id-type="pmid">6789691</pub-id>
</mixed-citation></ref><ref id="R42"><mixed-citation publication-type="book"><collab>R Core Team</collab>, <year>2021</year>. <source>R: A language and Environment For Statistical Computing</source>. <publisher-name>R Foundation for Statistical Computing</publisher-name>, <publisher-loc>Vienna, Austria</publisher-loc>. <ext-link xlink:href="https://www.R-project.org/" ext-link-type="uri">https://www.R-project.org/</ext-link>.</mixed-citation></ref><ref id="R43"><mixed-citation publication-type="journal"><name><surname>Salkeld</surname><given-names>DJ</given-names></name>, <name><surname>Lagana</surname><given-names>DM</given-names></name>, <name><surname>Wachara</surname><given-names>J</given-names></name>, <name><surname>Porter</surname><given-names>WT</given-names></name>, <name><surname>Nieto</surname><given-names>NC</given-names></name>, <year>2021</year>. <article-title>Examining prevalence and diversity of tick-borne pathogens in questing <italic toggle="yes">Ixodes pacificus</italic> ticks in California</article-title>. <source>Appl. Environ. Microbiol</source>. <volume>87</volume>. <pub-id pub-id-type="doi">10.1128/AEM.00319-21</pub-id>.</mixed-citation></ref><ref id="R44"><mixed-citation publication-type="journal"><name><surname>Sambado</surname><given-names>S</given-names></name>, <name><surname>Salomon</surname><given-names>J</given-names></name>, <name><surname>Crews</surname><given-names>A</given-names></name>, <name><surname>Swei</surname><given-names>A</given-names></name>, <year>2020</year>. <article-title>Mixed transmission modes promote persistence of an emerging tick-borne pathogen</article-title>. <source>Ecosphere</source>
<volume>11</volume>, <fpage>e03171</fpage>. <pub-id pub-id-type="doi">10.1002/ecs2.3171</pub-id>.</mixed-citation></ref><ref id="R45"><mixed-citation publication-type="book"><name><surname>Saunders</surname><given-names>M</given-names></name>, <name><surname>Kjemtrup</surname><given-names>A</given-names></name>, <year>2022</year>. <part-title>Chapter 3: tick-borne Diseases.</part-title>
<source>Vector-Borne Disease Section Annual Report, 2022</source>. <publisher-name>California Department of Public Health</publisher-name>, <publisher-loc>Sacramento, California</publisher-loc>, pp. <fpage>7</fpage>&#x02013;<lpage>13</lpage>.</mixed-citation></ref><ref id="R46"><mixed-citation publication-type="journal"><name><surname>Simser</surname><given-names>JA</given-names></name>, <name><surname>Palmer</surname><given-names>AT</given-names></name>, <name><surname>Fingerle</surname><given-names>V</given-names></name>, <name><surname>Wilske</surname><given-names>B</given-names></name>, <name><surname>Kurtti</surname><given-names>TJ</given-names></name>, <name><surname>Munderloh</surname><given-names>UG</given-names></name>, <year>2002</year>. <article-title><italic toggle="yes">Rickettsia monacensis</italic> sp. nov., a Spotted Fever Group Rickettsia, from Ticks (<italic toggle="yes">Ixodes ricinus</italic>) collected in a European city park</article-title>. <source>Appl. Environ. Microbiol</source>. <volume>68</volume>, <fpage>4556</fpage>&#x02013;<lpage>4566</lpage>. <pub-id pub-id-type="doi">10.1128/AEM.68.9.4559-4566.2002</pub-id>.</mixed-citation></ref><ref id="R47"><mixed-citation publication-type="journal"><name><surname>Socolovschi</surname><given-names>C</given-names></name>, <name><surname>Mediannikov</surname><given-names>O</given-names></name>, <name><surname>Raoult</surname><given-names>D</given-names></name>, <name><surname>Parola</surname><given-names>P</given-names></name>, <year>2009</year>. <article-title>The relationship between spotted fever group Rickettsiae and Ixodid ticks</article-title>. <source>Vet. Res</source>. <volume>40</volume>. <pub-id pub-id-type="doi">10.1051/vetres/2009017</pub-id>.</mixed-citation></ref><ref id="R48"><mixed-citation publication-type="journal"><name><surname>Sonenshine</surname><given-names>DE</given-names></name>, <name><surname>Macaluso</surname><given-names>KR</given-names></name>, <year>2017</year>. <article-title>Microbial invasion vs. tick immune regulation</article-title>. <source>Front. Cell. Infect. Microbiol</source>. <volume>7</volume>. <pub-id pub-id-type="doi">10.3389/fcimb.2017.00390</pub-id>.</mixed-citation></ref><ref id="R49"><mixed-citation publication-type="journal"><name><surname>Swei</surname><given-names>A</given-names></name>, <name><surname>Couper</surname><given-names>LI</given-names></name>, <name><surname>Coffey</surname><given-names>LL</given-names></name>, <name><surname>Kapan</surname><given-names>D</given-names></name>, <name><surname>Bennett</surname><given-names>S</given-names></name>, <year>2020</year>. <article-title>Patterns, drivers, and challenges of vector-borne disease emergence</article-title>. <source>Vector Borne Zoonotic Dis</source>. <volume>20</volume>, <fpage>159</fpage>&#x02013;<lpage>170</lpage>. <pub-id pub-id-type="doi">10.1089/vbz.2018.2432</pub-id>.<pub-id pub-id-type="pmid">31800374</pub-id>
</mixed-citation></ref><ref id="R50"><mixed-citation publication-type="journal"><collab>USDA-Forest Service ECOMAP Team</collab>, <year>2017</year>. <article-title>Ecological Subregions: sections and Subsections for the Conterminous United States</article-title>. <source>Ecological Sections by Climate</source>
<ext-link xlink:href="https://data.fs.usda.gov/geodata/edw/datasets.php?dsetCategory=geoscientificinformation" ext-link-type="uri">https://data.fs.usda.gov/geodata/edw/datasets.php?dsetCategory=geoscientificinformation</ext-link>.</mixed-citation></ref><ref id="R51"><mixed-citation publication-type="journal"><name><surname>Xu</surname><given-names>G</given-names></name>, <name><surname>Pearson</surname><given-names>P</given-names></name>, <name><surname>Dykstra</surname><given-names>E</given-names></name>, <name><surname>Andrews</surname><given-names>ES</given-names></name>, <name><surname>Rich</surname><given-names>SM</given-names></name>, <year>2019</year>. <article-title>Human-biting <italic toggle="yes">Ixodes</italic> ticks and pathogen prevalence from California, Oregon, and Washington</article-title>. <source>Vector Borne Zoonotic Dis</source>
<volume>19</volume>, <fpage>106</fpage>&#x02013;<lpage>114</lpage>. <pub-id pub-id-type="doi">10.1089/vbz.2018.2323</pub-id>.<pub-id pub-id-type="pmid">30207871</pub-id>
</mixed-citation></ref></ref-list></back><floats-group><fig position="float" id="F1"><label>Fig. 1.</label><caption><p id="P36">Collection-site map grouped by mean annual temperature in degrees Fahrenheit (1A) and collection map grouped by mean annual relative humidity, values expressed as percentages (1B). The samples spanned four different temperature zones: the 10&#x02013;11.1 &#x000b0;C (50&#x02013;52&#x000b0;F) zone, 11.7&#x02013;13.3 &#x000b0;C (53&#x02013;56&#x000b0;F) zone, 13.9&#x02013;15 &#x000b0;C (57&#x02013;59&#x000b0;F) zone, and 15.5&#x02013;16.7 &#x000b0;C (60&#x02013;62&#x000b0;F) zone. The samples spanned four different relative humidity zones: the 56&#x02013;59 % range, 59&#x02013;63 % range, 63&#x02013;66 % range, and 66&#x02013;70 % range. The most southern county sampled for ticks was Santa Cruz, with the most northern being Humboldt. Red stars designate the adult collection sites while yellow triangles indicate nymphal collection sites. The collection site in Napa County was the same for both adults and nymphs, so the icons overlap.</p></caption><graphic xlink:href="nihms-2091310-f0001" position="float"/></fig><table-wrap position="float" id="T1" orientation="landscape"><label>Table 1</label><caption><p id="P37">Prevalence data for <italic toggle="yes">Rickettsia</italic> species phylotype G022 and <italic toggle="yes">R. tillamookensis</italic> in <italic toggle="yes">Ixodes pacificu</italic>s adults and nymphs by location. All adults were collected in 2020 and nymphs are from multiple years.</p></caption><table frame="hsides" rules="none"><colgroup span="1"><col align="left" valign="top" span="1"/><col align="left" valign="top" span="1"/><col align="left" valign="top" span="1"/><col align="left" valign="top" span="1"/><col align="left" valign="top" span="1"/><col align="left" valign="top" span="1"/><col align="left" valign="top" span="1"/><col align="left" valign="top" span="1"/></colgroup><thead><tr><th align="left" valign="top" rowspan="1" colspan="1">County</th><th align="left" valign="top" rowspan="1" colspan="1">Location</th><th align="left" valign="top" rowspan="1" colspan="1">Coordinates</th><th align="left" valign="top" rowspan="1" colspan="1">Date Collected</th><th align="left" valign="top" rowspan="1" colspan="1">Habitat</th><th align="left" valign="top" rowspan="1" colspan="1">No. of Adults (%, 95 % CI) with G022/n</th><th align="left" valign="top" rowspan="1" colspan="1">No. of Nymphs (%, 95 % CI) with G022/n</th><th align="left" valign="top" rowspan="1" colspan="1">No. of Nymphs (%, 95 % CI) <italic toggle="yes">with R. tillamookensis/ n</italic></th></tr><tr><th colspan="8" align="left" valign="top" rowspan="1">
<hr/>
</th></tr></thead><tbody><tr><td align="left" valign="top" rowspan="1" colspan="1">Alameda</td><td align="left" valign="top" rowspan="1" colspan="1">Dublin hills</td><td align="left" valign="top" rowspan="1" colspan="1">37.718055, - 121.914722</td><td align="left" valign="top" rowspan="1" colspan="1">3/19/20, 3/31/20</td><td align="left" valign="top" rowspan="1" colspan="1">Annual Grassland</td><td align="left" valign="top" rowspan="1" colspan="1">2(16.7 %,4.7 %- 44.8 %)/12</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">Contra Costa</td><td align="left" valign="top" rowspan="1" colspan="1">Las Trampas Regional Wilderness</td><td align="left" valign="top" rowspan="1" colspan="1">37.815511, - 122.047095</td><td align="left" valign="top" rowspan="1" colspan="1">1/3/20, 4/27/21, 5/ 16/21</td><td align="left" valign="top" rowspan="1" colspan="1">Oak Woodland</td><td align="left" valign="top" rowspan="1" colspan="1">5(12.8 %,5.6 %- 26.7 %)/39</td><td align="left" valign="top" rowspan="1" colspan="1">1(1.5 %, 0.3 %- 8.1 %)/66</td><td align="left" valign="top" rowspan="1" colspan="1">0(0 %, 0 %- 6.0 %)/66</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">Bishop Ranch Regional Preserve</td><td align="left" valign="top" rowspan="1" colspan="1">37.75, - 121.964166</td><td align="left" valign="top" rowspan="1" colspan="1">4/13/20</td><td align="left" valign="top" rowspan="1" colspan="1">Oak Woodland</td><td align="left" valign="top" rowspan="1" colspan="1">0(0 %, 0 %- 40.0 %)/5</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">Bollinger Canyon Rd.</td><td align="left" valign="top" rowspan="1" colspan="1">37.798349, - 122.029860</td><td align="left" valign="top" rowspan="1" colspan="1">2/21/20, 3/10/20</td><td align="left" valign="top" rowspan="1" colspan="1">Oak Woodland</td><td align="justify" valign="top" rowspan="1" colspan="1">4(12.1 %, 4.8 %- 27.3 %)/33</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">Tilden Regional Park</td><td align="left" valign="top" rowspan="1" colspan="1">37.910555, - 122.267222</td><td align="left" valign="top" rowspan="1" colspan="1">5/10/21</td><td align="left" valign="top" rowspan="1" colspan="1">Oak Woodland</td><td align="justify" valign="top" rowspan="1" colspan="1">N/A</td><td align="left" valign="top" rowspan="1" colspan="1">0(0 %, 0 %- 8.0 %)/46</td><td align="left" valign="top" rowspan="1" colspan="1">1(2.2 %, 0.4 %- 11.3 %)/46</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">County Prevalence</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td><td align="justify" valign="top" rowspan="1" colspan="1">9(11.7 %,6.3 %- 20.8 %)/77</td><td align="left" valign="top" rowspan="1" colspan="1">1(0.9 %, 0.2 %- 4.9 %)/112</td><td align="left" valign="top" rowspan="1" colspan="1">1(0.9 %, 0.2 %- 4.9 %)/112</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">Humboldt</td><td align="left" valign="top" rowspan="1" colspan="1">Green Diamond Resource Co. - MR4100</td><td align="left" valign="top" rowspan="1" colspan="1">40.863611, - 123.970277</td><td align="left" valign="top" rowspan="1" colspan="1">5/4/20, 5/15/20, 5/ 21/20, 6/3/20, 6/8/ 21</td><td align="left" valign="top" rowspan="1" colspan="1">Redwood</td><td align="justify" valign="top" rowspan="1" colspan="1">31(7.4 %,5.3 %- 10.4 %)/417</td><td align="left" valign="top" rowspan="1" colspan="1">0(0 %, 0 %- 80.0 %)/1</td><td align="left" valign="top" rowspan="1" colspan="1">0(0 %, 0 %- 80.0 %)/1</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">Green Diamond Resource Co. - Fulton Ranch</td><td align="left" valign="top" rowspan="1" colspan="1">40.859166, - 123.843888</td><td align="left" valign="top" rowspan="1" colspan="1">5/23/20</td><td align="left" valign="top" rowspan="1" colspan="1">Redwood</td><td align="justify" valign="top" rowspan="1" colspan="1">4(6.0 %, 2.4 %- 14.4 %)/67</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">Lacks Creek Management Area</td><td align="left" valign="top" rowspan="1" colspan="1">41.033888, - 123.791388</td><td align="left" valign="top" rowspan="1" colspan="1">6/23/21, 6/27/21, 7/ 3/21</td><td align="left" valign="top" rowspan="1" colspan="1">Montane Hardwood Conifer</td><td align="justify" valign="top" rowspan="1" colspan="1">N/A</td><td align="left" valign="top" rowspan="1" colspan="1">0(0 %, 0 %- 10.0 %)/29</td><td align="left" valign="top" rowspan="1" colspan="1">2(6.9 %, 1.9 %-22.0 %)/29</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">Six Rivers National Forest - Boise Creek Campground</td><td align="left" valign="top" rowspan="1" colspan="1">40.944999, - 123.657777</td><td align="left" valign="top" rowspan="1" colspan="1">7/21/21, 7/29/21</td><td align="left" valign="top" rowspan="1" colspan="1">Oak Woodland</td><td align="justify" valign="top" rowspan="1" colspan="1">N/A</td><td align="left" valign="top" rowspan="1" colspan="1">1(9.0 %, 1.6 %- 37.7 %)/11</td><td align="left" valign="top" rowspan="1" colspan="1">0(0%, 0%-29.5%)/11</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">County Prevalence</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td><td align="justify" valign="top" rowspan="1" colspan="1">35(6.5 %,5.3 %- 9.9 %)/538</td><td align="left" valign="top" rowspan="1" colspan="1">1(2.4 %, 0.43 %- 12.6 %)/41</td><td align="left" valign="top" rowspan="1" colspan="1">2(4.9%,1.4%- 16.1%)/41</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">Mendocino</td><td align="left" valign="top" rowspan="1" colspan="1">Hopland Research and Extension Center (HREC)</td><td align="left" valign="top" rowspan="1" colspan="1">39.000556, - 123.079721</td><td align="left" valign="top" rowspan="1" colspan="1">5/24/09</td><td align="left" valign="top" rowspan="1" colspan="1">Oak Woodland</td><td align="justify" valign="top" rowspan="1" colspan="1">N/A</td><td align="left" valign="top" rowspan="1" colspan="1">5(3.0 %, 1.3 %- 6.9 %)/165</td><td align="left" valign="top" rowspan="1" colspan="1">3(1.8 %, 0.6 %- 5.2 %)/165</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">Napa</td><td align="left" valign="top" rowspan="1" colspan="1">Bothe - Napa Valley State Park</td><td align="left" valign="top" rowspan="1" colspan="1">38.540939, - 122.537876</td><td align="left" valign="top" rowspan="1" colspan="1">1/10/20, 4/28/21</td><td align="left" valign="top" rowspan="1" colspan="1">Oak Woodland</td><td align="left" valign="top" rowspan="1" colspan="1">19(12.9 %,7.6 %- 19.3 %)/147</td><td align="left" valign="top" rowspan="1" colspan="1">15(12.3 %,7.6 %- 19.3 %)/122</td><td align="left" valign="top" rowspan="1" colspan="1">1(0.8 %,0.1 %- 4.5 %)/122</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">Santa Cruz</td><td align="left" valign="top" rowspan="1" colspan="1">Forest Ecology Research Plot (FERP)</td><td align="left" valign="top" rowspan="1" colspan="1">37.012400, - 122.075000</td><td align="left" valign="top" rowspan="1" colspan="1">10/21/16, 10/24/16</td><td align="left" valign="top" rowspan="1" colspan="1">Oak Woodland</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td><td align="left" valign="top" rowspan="1" colspan="1">0(0 %, 0 %- 40.0 %)/7</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">Sonoma</td><td align="left" valign="top" rowspan="1" colspan="1">Sugarloaf State Park</td><td align="left" valign="top" rowspan="1" colspan="1">38.436885, - 122.510293</td><td align="left" valign="top" rowspan="1" colspan="1">5/31/07</td><td align="left" valign="top" rowspan="1" colspan="1">Oak Woodland</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td><td align="left" valign="top" rowspan="1" colspan="1">0(0 %, 0 %- 50.0 %)/4</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">Bouverie State Park</td><td align="left" valign="top" rowspan="1" colspan="1">38.367777, - 122.513055</td><td align="left" valign="top" rowspan="1" colspan="1">4/20/06</td><td align="left" valign="top" rowspan="1" colspan="1">Oak Woodland</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td><td align="left" valign="top" rowspan="1" colspan="1">3(33.3 %, 10 %- 60.0 %)/9</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">Annadel State Park</td><td align="left" valign="top" rowspan="1" colspan="1">38.434444, - 122.632538</td><td align="left" valign="top" rowspan="1" colspan="1">5/15/07, 5/17/07, 5/ 21/07</td><td align="left" valign="top" rowspan="1" colspan="1">Oak Woodland</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td><td align="left" valign="top" rowspan="1" colspan="1">0(0 %, 0 %- 10.0 %)/31</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">Fairfield Osborne Preserve</td><td align="left" valign="top" rowspan="1" colspan="1">38.343333, - 122.594722</td><td align="left" valign="top" rowspan="1" colspan="1">4/27/06, 5/23/07, 5/ 24/07, 5/28/19</td><td align="left" valign="top" rowspan="1" colspan="1">Oak Woodland</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td><td align="left" valign="top" rowspan="1" colspan="1">4(12.5 %,5.0 %- 28.1 %)/32</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">Spring Lake Regional Park</td><td align="left" valign="top" rowspan="1" colspan="1">38.451111, - 122.650277</td><td align="left" valign="top" rowspan="1" colspan="1">5/29/19, 5/22/20</td><td align="left" valign="top" rowspan="1" colspan="1">Oak Woodland</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td><td align="left" valign="top" rowspan="1" colspan="1">0(0 %, 0 %- 20.0 %)/16</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">Audobon Bouverie Preserve</td><td align="left" valign="top" rowspan="1" colspan="1">38.364359, - 122.509971</td><td align="left" valign="top" rowspan="1" colspan="1">5/22/07 to 6/1/07</td><td align="left" valign="top" rowspan="1" colspan="1">Oak Woodland</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td><td align="left" valign="top" rowspan="1" colspan="1">0(0 %, 0 %- 29.5 %)/11</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">County Prevalence</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td><td align="left" valign="top" rowspan="1" colspan="1">7(6.7 %, 3.3 %- 13.4 %)/103</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">Total</td><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">65(9.0 %,7.2 %- 11.3 %)/720</td><td align="left" valign="top" rowspan="1" colspan="1">29(5.3 %,3.7 %- 7.5 %)/550</td><td align="left" valign="top" rowspan="1" colspan="1">7(1.6 %, 0.8 %- 3.3 %)/440</td></tr></tbody></table><table-wrap-foot><fn id="TFN1"><p id="P38">N/<italic toggle="yes">A</italic>= no samples from location tested, <italic toggle="yes">n</italic>= the number of ticks collected.</p></fn><fn id="TFN2"><label>1</label><p id="P39">N/A under Coordinates, Date collected, and Habitat is a placeholder for empty space.</p></fn></table-wrap-foot></table-wrap><table-wrap position="float" id="T2" orientation="landscape"><label>Table 2</label><caption><p id="P40">Primers and probes used in the real-time PCR assay.</p></caption><table frame="hsides" rules="none"><colgroup span="1"><col align="left" valign="top" span="1"/><col align="left" valign="top" span="1"/><col align="left" valign="top" span="1"/><col align="left" valign="top" span="1"/><col align="left" valign="top" span="1"/></colgroup><thead><tr><th align="left" valign="top" rowspan="1" colspan="1">Gene name</th><th align="left" valign="top" rowspan="1" colspan="1">Primer/Probe</th><th align="left" valign="top" rowspan="1" colspan="1">Sequence (5&#x02032; to 3&#x02032;)</th><th align="left" valign="top" rowspan="1" colspan="1">PCR Product Size</th><th align="left" valign="top" rowspan="1" colspan="1">Reference</th></tr><tr><th colspan="5" align="left" valign="top" rowspan="1">
<hr/>
</th></tr></thead><tbody><tr><td align="left" valign="top" rowspan="1" colspan="1"><italic toggle="yes">ompA</italic> (phylotype G022)</td><td align="left" valign="top" rowspan="1" colspan="1">22-F</td><td align="left" valign="top" rowspan="1" colspan="1">CTGCAGATATAGCCGGTCGTATT</td><td align="left" valign="top" rowspan="1" colspan="1">98-bp</td><td align="left" valign="top" rowspan="1" colspan="1">
<xref rid="R5" ref-type="bibr">Cheng et al. (2013a)</xref>
</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"><italic toggle="yes">ompA</italic> (phylotype G022)</td><td align="left" valign="top" rowspan="1" colspan="1">22-R</td><td align="left" valign="top" rowspan="1" colspan="1">TAATCGAACCAACGACGGTATTT</td><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">
<xref rid="R5" ref-type="bibr">Cheng et al. (2013a)</xref>
</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"><italic toggle="yes">ompA</italic> (phylotype G022)</td><td align="left" valign="top" rowspan="1" colspan="1">22-probe</td><td align="left" valign="top" rowspan="1" colspan="1">VIC&#x02014;CTCCCGTAGGTCTAAA-MGB</td><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">
<xref rid="R5" ref-type="bibr">Cheng et al. (2013a)</xref>
</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"><italic toggle="yes">ompA</italic> (<italic toggle="yes">R. monacensis</italic> str. Humboldt)</td><td align="left" valign="top" rowspan="1" colspan="1">21-F</td><td align="left" valign="top" rowspan="1" colspan="1">ACGGCTGGAGGAGTAGCTAATG</td><td align="left" valign="top" rowspan="1" colspan="1">76-bp</td><td align="left" valign="top" rowspan="1" colspan="1">
<xref rid="R5" ref-type="bibr">Cheng et al. (2013a)</xref>
</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"><italic toggle="yes">ompA</italic> (<italic toggle="yes">R. monacensis</italic> str. Humboldt)</td><td align="left" valign="top" rowspan="1" colspan="1">21-R</td><td align="left" valign="top" rowspan="1" colspan="1">GATTACCACCGTAAGTAAATGCCTTAT</td><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">
<xref rid="R5" ref-type="bibr">Cheng et al. (2013a)</xref>
</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"><italic toggle="yes">ompA</italic> (<italic toggle="yes">R. monacensis</italic> str. Humboldt)</td><td align="left" valign="top" rowspan="1" colspan="1">21-probe</td><td align="left" valign="top" rowspan="1" colspan="1">FAM-TCCTGTTGACGGTCCT-MGB</td><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">
<xref rid="R5" ref-type="bibr">Cheng et al. (2013a)</xref>
</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"><italic toggle="yes">aspS</italic> (<italic toggle="yes">R. tillamookensis</italic>)</td><td align="left" valign="top" rowspan="1" colspan="1">TillF4</td><td align="left" valign="top" rowspan="1" colspan="1">GCTTGCTGATTTAAAGGAAATGCA</td><td align="left" valign="top" rowspan="1" colspan="1">157-bp</td><td align="left" valign="top" rowspan="1" colspan="1">
<xref rid="R35" ref-type="bibr">Paddock et al. (2022)</xref>
</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"><italic toggle="yes">aspS</italic> (<italic toggle="yes">R. tillamookensis</italic>)</td><td align="left" valign="top" rowspan="1" colspan="1">TillR4</td><td align="left" valign="top" rowspan="1" colspan="1">AGGAAGTTGATAAGAGATTTGGGG</td><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">
<xref rid="R35" ref-type="bibr">Paddock et al. (2022)</xref>
</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"><italic toggle="yes">aspS</italic> (<italic toggle="yes">R. tillamookensis</italic>)</td><td align="left" valign="top" rowspan="1" colspan="1">Till_P</td><td align="left" valign="top" rowspan="1" colspan="1">FAM-CCATGCGGCGGTGCTCCAAACT-BHQ1</td><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">
<xref rid="R35" ref-type="bibr">Paddock et al. (2022)</xref>
</td></tr></tbody></table></table-wrap><table-wrap position="float" id="T3" orientation="landscape"><label>Table 3</label><caption><p id="P41">Prevalence of <italic toggle="yes">Rickettsia</italic> species phylotype G022 and <italic toggle="yes">R. tillamookensis</italic> based on mean annual temperature range.</p></caption><table frame="hsides" rules="none"><colgroup span="1"><col align="left" valign="top" span="1"/><col align="left" valign="top" span="1"/><col align="left" valign="top" span="1"/><col align="left" valign="top" span="1"/><col align="left" valign="top" span="1"/><col align="left" valign="top" span="1"/></colgroup><thead><tr><th align="left" valign="top" rowspan="1" colspan="1">Mean Counties&#x02019; Annual Temperature Range ( &#x000b0;C)</th><th align="left" valign="top" rowspan="1" colspan="1">County</th><th align="left" valign="top" rowspan="1" colspan="1">Location</th><th align="left" valign="top" rowspan="1" colspan="1">G022 Prevalence in Adults (95 % CI)/n</th><th align="left" valign="top" rowspan="1" colspan="1">G022 Prevalence in Nymphs (95 % CI)/n</th><th align="left" valign="top" rowspan="1" colspan="1"><italic toggle="yes">R. tillamookensis</italic> Prevalence in Nymphs (95 % CI)/n</th></tr><tr><th colspan="6" align="left" valign="top" rowspan="1">
<hr/>
</th></tr></thead><tbody><tr><td align="left" valign="top" rowspan="1" colspan="1">10&#x02013;11.1</td><td align="left" valign="top" rowspan="1" colspan="1">Humboldt</td><td align="left" valign="top" rowspan="1" colspan="1">Boise Creek</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td><td align="left" valign="top" rowspan="1" colspan="1">9.0 % (1.6 %&#x02013; 37.7 %)/11</td><td align="left" valign="top" rowspan="1" colspan="1">0 % (0 %&#x02013; 25.9 %)/11</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">11.7&#x02013;13.3</td><td align="left" valign="top" rowspan="1" colspan="1">Humboldt</td><td align="left" valign="top" rowspan="1" colspan="1">Green Diamond</td><td align="left" valign="top" rowspan="1" colspan="1">8.6 % (6.6 %&#x02013; 11.0 %)/631</td><td align="left" valign="top" rowspan="1" colspan="1"><xref rid="TFN4" ref-type="table-fn">*</xref>6.4 % (4.5 %&#x02013; 9.2 %)/420</td><td align="left" valign="top" rowspan="1" colspan="1">1.9 % (0.9 %&#x02013; 4.1 %)/317</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">Resource Co.</td><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">Lacks Creek</td><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">Recreation Area</td><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">Napa</td><td align="left" valign="top" rowspan="1" colspan="1">Bothe</td><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">Mendocino</td><td align="left" valign="top" rowspan="1" colspan="1">HREC</td><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">Sonoma</td><td align="left" valign="top" rowspan="1" colspan="1">See <xref rid="T1" ref-type="table">Table 1</xref></td><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">13.9&#x02013;15</td><td align="left" valign="top" rowspan="1" colspan="1">Contra</td><td align="left" valign="top" rowspan="1" colspan="1">Las Trampas</td><td align="left" valign="top" rowspan="1" colspan="1">12.5 % (6.3 %&#x02013; 20.8 %)/72</td><td align="left" valign="top" rowspan="1" colspan="1"><xref rid="TFN4" ref-type="table-fn">*</xref>0.8 % (0.2 %&#x02013; 4.6 %)/119</td><td align="left" valign="top" rowspan="1" colspan="1">0.9 % (0.2 %&#x02013; 4.9 %)/112</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">Costa</td><td align="left" valign="top" rowspan="1" colspan="1">Bollinger Canyon<sup><xref rid="TFN5" ref-type="table-fn">1</xref></sup></td><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">Tilden Regional Park</td><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">Santa Cruz</td><td align="left" valign="top" rowspan="1" colspan="1">FERP</td><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">15.5&#x02013;16.7</td><td align="left" valign="top" rowspan="1" colspan="1">Alameda</td><td align="left" valign="top" rowspan="1" colspan="1">Dublin Hills</td><td align="left" valign="top" rowspan="1" colspan="1">11.8 % (4.7 %&#x02013; 44.8 %)/17</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">Contra</td><td align="left" valign="top" rowspan="1" colspan="1">Bishop Ranch</td><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">Costa</td><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/></tr></tbody></table><table-wrap-foot><fn id="TFN3"><p id="P42">N/<italic toggle="yes">A</italic>= no sample in that range.</p></fn><fn id="TFN4"><label>*</label><p id="P43">statistically significant difference between two ranges.</p></fn><fn id="TFN5"><label>1</label><p id="P44">location specific to adult results.</p></fn><fn id="TFN6"><label>2</label><p id="P45">Prevalence data is given per grouping of mean temperature range.</p></fn></table-wrap-foot></table-wrap><table-wrap position="float" id="T4" orientation="landscape"><label>Table 4</label><caption><p id="P46">Prevalence of <italic toggle="yes">Rickettsia</italic> species phylotype G022 and <italic toggle="yes">R. tillamookensis</italic> based on mean annual relative humidity range.</p></caption><table frame="hsides" rules="none"><colgroup span="1"><col align="left" valign="top" span="1"/><col align="left" valign="top" span="1"/><col align="left" valign="top" span="1"/><col align="left" valign="top" span="1"/><col align="left" valign="top" span="1"/><col align="left" valign="top" span="1"/></colgroup><thead><tr><th align="left" valign="top" rowspan="1" colspan="1">Mean Annual Relative Humidity (%)</th><th align="left" valign="top" rowspan="1" colspan="1">County</th><th align="left" valign="top" rowspan="1" colspan="1">Location</th><th align="left" valign="top" rowspan="1" colspan="1">G022 Prevalence in Adults (95 % CI)/n</th><th align="left" valign="top" rowspan="1" colspan="1">G022 Prevalence in Nymphs (95 % CI)/n</th><th align="left" valign="top" rowspan="1" colspan="1"><italic toggle="yes">R. tillamookensis</italic> Prevalence in Nymphs (95 % CI)/n</th></tr><tr><th colspan="6" align="left" valign="top" rowspan="1">
<hr/>
</th></tr></thead><tbody><tr><td align="left" valign="top" rowspan="1" colspan="1">56&#x02013;59</td><td align="left" valign="top" rowspan="1" colspan="1">Alameda</td><td align="left" valign="top" rowspan="1" colspan="1">Dublin Hills</td><td align="left" valign="top" rowspan="1" colspan="1">11.7 % (3.3 %&#x02013; 34.3 %)/17</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">Contra</td><td align="left" valign="top" rowspan="1" colspan="1">Bishop Ranch</td><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">Costa</td><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">59&#x02013;63</td><td align="left" valign="top" rowspan="1" colspan="1">Humboldt</td><td align="left" valign="top" rowspan="1" colspan="1">Green Diamond- Fulton</td><td align="left" valign="top" rowspan="1" colspan="1">6.0 % (2.4 %&#x02013; 14.4 %)/67</td><td align="left" valign="top" rowspan="1" colspan="1">2.6 % (1.1 %&#x02013; 5.9 %)/194</td><td align="left" valign="top" rowspan="1" colspan="1">2.6 % (1.1 %&#x02013; 5.9 %)/194</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">Ranch<sup><xref rid="TFN8" ref-type="table-fn">1</xref></sup></td><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">Lacks Creek</td><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">Mendocino</td><td align="left" valign="top" rowspan="1" colspan="1">HREC</td><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">63&#x02013;66</td><td align="left" valign="top" rowspan="1" colspan="1">Humboldt</td><td align="left" valign="top" rowspan="1" colspan="1">Boise Creek</td><td align="left" valign="top" rowspan="1" colspan="1">N/A</td><td align="left" valign="top" rowspan="1" colspan="1">9.1 % (1.6 %&#x02013; 37.7 %)/11</td><td align="left" valign="top" rowspan="1" colspan="1">0 % (0 %&#x02013; 25.9 %)/11</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">66&#x02013;70</td><td align="left" valign="top" rowspan="1" colspan="1">Napa</td><td align="left" valign="top" rowspan="1" colspan="1">Bothe</td><td align="left" valign="top" rowspan="1" colspan="1">9.3 % (7.3 %&#x02013; 11.8 %)/636</td><td align="left" valign="top" rowspan="1" colspan="1">6.7 % (4.5 %&#x02013; 9.8 %)/345</td><td align="left" valign="top" rowspan="1" colspan="1">0.9 % (0.2 %&#x02013; 3.1 %)/235</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">Humboldt</td><td align="left" valign="top" rowspan="1" colspan="1">Green Diamond-MR4100</td><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">Contra</td><td align="left" valign="top" rowspan="1" colspan="1">Las Trampas</td><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">Costa</td><td align="left" valign="top" rowspan="1" colspan="1">Tilden Regional Park</td><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">Bollinger Canyon<sup><xref rid="TFN8" ref-type="table-fn">1</xref></sup></td><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">Sonoma</td><td align="left" valign="top" rowspan="1" colspan="1">See <xref rid="T1" ref-type="table">Table 1</xref></td><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1">Santa Cruz</td><td align="left" valign="top" rowspan="1" colspan="1">FERP</td><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/></tr></tbody></table><table-wrap-foot><fn id="TFN7"><p id="P47">N/<italic toggle="yes">A</italic>= no sample in that range,</p></fn><fn id="TFN8"><label>1</label><p id="P48">location specific to adult results.</p></fn><fn id="TFN9"><label>3</label><p id="P49">Prevalence data is given per grouping of mean relative humidity range.</p></fn></table-wrap-foot></table-wrap></floats-group></article>