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<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" dtd-version="1.4" xml:lang="en" article-type="research-article"><?properties manuscript?><processing-meta base-tagset="archiving" mathml-version="3.0" table-model="xhtml" tagset-family="jats"><restricted-by>pmc</restricted-by></processing-meta><front><journal-meta><journal-id journal-id-type="nlm-journal-id">0330500</journal-id><journal-id journal-id-type="pubmed-jr-id">7472</journal-id><journal-id journal-id-type="nlm-ta">Sci Total Environ</journal-id><journal-id journal-id-type="iso-abbrev">Sci Total Environ</journal-id><journal-title-group><journal-title>The Science of the total environment</journal-title></journal-title-group><issn pub-type="ppub">0048-9697</issn><issn pub-type="epub">1879-1026</issn></journal-meta><article-meta><article-id pub-id-type="pmid">40435729</article-id><article-id pub-id-type="pmc">13140102</article-id><article-id pub-id-type="doi">10.1016/j.scitotenv.2025.179591</article-id><article-id pub-id-type="manuscript">NIHMS2085613</article-id><article-categories><subj-group subj-group-type="heading"><subject>Article</subject></subj-group></article-categories><title-group><article-title>Swine production intensity and swine-specific fecal contamination of household surfaces at residences of industrial livestock operation workers and community residents, North Carolina, USA</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Kurowski</surname><given-names>Kathleen M</given-names></name><xref rid="A1" ref-type="aff">1</xref><xref rid="A2" ref-type="aff">2</xref></contrib><contrib contrib-type="author"><name><surname>Pisanic</surname><given-names>Nora</given-names></name><xref rid="A1" ref-type="aff">1</xref><xref rid="A2" ref-type="aff">2</xref></contrib><contrib contrib-type="author"><name><surname>Spicer</surname><given-names>Kristoffer</given-names></name><xref rid="A1" ref-type="aff">1</xref><xref rid="A2" ref-type="aff">2</xref></contrib><contrib contrib-type="author"><name><surname>Kruczynski</surname><given-names>Kate</given-names></name><xref rid="A1" ref-type="aff">1</xref></contrib><contrib contrib-type="author"><name><surname>Gigot</surname><given-names>Carolyn</given-names></name><xref rid="A1" ref-type="aff">1</xref><xref rid="A2" ref-type="aff">2</xref></contrib><contrib contrib-type="author"><name><surname>Hall</surname><given-names>Devon J.</given-names><suffix>Jr</suffix></name><xref rid="A3" ref-type="aff">3</xref></contrib><contrib contrib-type="author"><name><surname>Hall</surname><given-names>Devon J.</given-names><suffix>Sr</suffix></name><xref rid="A3" ref-type="aff">3</xref></contrib><contrib contrib-type="author"><name><surname>Aune</surname><given-names>Kyle T.</given-names></name><xref rid="A1" ref-type="aff">1</xref></contrib><contrib contrib-type="author"><name><surname>Salmer&#x000f3;n</surname><given-names>Bonita</given-names></name><xref rid="A1" ref-type="aff">1</xref><xref rid="A2" ref-type="aff">2</xref></contrib><contrib contrib-type="author"><name><surname>Rule</surname><given-names>Ana M.</given-names></name><xref rid="A1" ref-type="aff">1</xref></contrib><contrib contrib-type="author"><name><surname>Heaney</surname><given-names>Christopher D.</given-names></name><xref rid="A1" ref-type="aff">1</xref><xref rid="A2" ref-type="aff">2</xref><xref rid="A4" ref-type="aff">4</xref><xref rid="A5" ref-type="aff">5</xref><xref rid="CR1" ref-type="corresp">*</xref></contrib></contrib-group><aff id="A1"><label>1</label>Department of Environmental Health and Engineering, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, USA</aff><aff id="A2"><label>2</label>Community Science and Innovation for Environmental Justice Initiative, Center for a Livable Future, Department of Environmental Health and Engineering, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, USA</aff><aff id="A3"><label>3</label>Rural Empowerment Association for Community Help, Warsaw, North Carolina, USA</aff><aff id="A4"><label>4</label>Department of Epidemiology, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, USA</aff><aff id="A5"><label>5</label>Department of International Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, USA</aff><author-notes><corresp id="CR1"><label>*</label>Corresponding author: Christopher D. Heaney, Department of Environmental Health and Engineering, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, USA. <email>cheaney1@jhu.edu</email>.</corresp></author-notes><pub-date pub-type="nihms-submitted"><day>10</day><month>4</month><year>2026</year></pub-date><pub-date pub-type="ppub"><day>10</day><month>7</month><year>2025</year></pub-date><pub-date pub-type="epub"><day>27</day><month>5</month><year>2025</year></pub-date><pub-date pub-type="pmc-release"><day>27</day><month>5</month><year>2026</year></pub-date><volume>985</volume><fpage>179591</fpage><lpage>179591</lpage><abstract id="ABS1"><p id="P1">In North Carolina (NC), industrial livestock operations (ILOs) that produce swine concentrate fecal waste in lagoons and sprayfields, which are disproportionately located in low-income, communities of color. Although swine-specific fecal contamination of waters proximal to swine ILOs has been documented, less is known about contamination of homes proximal to swine ILOs. Up to 6 outdoor and 6 indoor surface settled dust samples were collected from households: 1) with &#x0003e;= 1 ILO worker (ILO-W); 2) neighboring ILOs without occupational exposure to livestock (ILO-N); and 3) in metropolitan areas of NC (Metro). Using quantitative real-time PCR, the DNA copy number of Pig-2-Bac, a swine-specific fecal microbial source tracking (MST) marker, per square inch of household surfaces sampled was measured. We used permits of swine ILOs and steady state live weight to assign swine production intensity (SPI) exposure values to each household. We estimated associations between household group (Metro as reference), outdoor versus indoor household surface, and log<sub>10</sub> SPI with Pig-2-Bac DNA detection frequency (logistic) and quantity (linear) via regression modeling. Prevalence of household Pig-2-Bac positivity was 38% (40/105) at ILO-W (159/536 swabs; 30%); 44% (47/107) at ILO-N (142/557 swabs; 25%), and 1% (1/81) at Metro (1/321 swabs; 1%) households. Pig-2-Bac DNA was detected more often (odds ratio [OR] = 2.2; 95% confidence interval [CI] = 1.6, 3.0) and in higher quantity (&#x003b2; = 0.30; 95% CI = 0.19, 0.41) on outdoor compared to indoor surfaces. For every log<sub>10</sub> unit increase in SPI, the Pig-2-Bac DNA detection frequency (OR = 5.4; 95% CI = 2.8, 10.4) and quantity (&#x003b2; = 0.21; 95% CI = 0.13, 0.29) increased. Results demonstrate the utility of Pig-2-Bac DNA measurement in household surface dust and suggest that swine ILOs contribute to the contamination of NC community residents&#x02019; households with swine fecal material.</p></abstract><abstract id="ABS2" abstract-type="graphical"><title>Graphical Abstract</title><p id="P2">
<graphic xlink:href="nihms-2085613-f0004.jpg" position="anchor"/>
</p></abstract><kwd-group><kwd>Concentrated animal feeding operations (CAFOs)</kwd><kwd>Hog production</kwd><kwd>Swine</kwd><kwd>Pig-2-Bac</kwd><kwd>Environmental justice</kwd><kwd>fecal contamination</kwd><kwd>Microbial source tracking</kwd></kwd-group></article-meta></front><body><sec id="S1"><label>1.</label><title>Introduction</title><p id="P3">Hog production in North Carolina (NC) is a multi-billion-dollar industry dominated by a small number of large, vertically integrated, transnational corporations, with one corporation controlling approximately 90% of the state&#x02019;s hog production.<sup><xref rid="R1" ref-type="bibr">1</xref></sup> While most US-grown pork is consumed in the country, the US has also increasingly become a major exporter of pork, mainly to Japan, Mexico, China and Canada. While the product of these operations is shipped internationally, the adverse environmental impacts of industrial livestock production, including the 10 billion gallons of liquid pig manure that NC&#x02019;s 18 million pigs produce each year<sup><xref rid="R2" ref-type="bibr">2</xref>,<xref rid="R3" ref-type="bibr">3</xref></sup>, remain a local burden. Almost all wine in NC are raised in large-scale, vertically-integrated industrial livestock operations (ILO) designed to maximize outputs and minimize costs.<sup><xref rid="R4" ref-type="bibr">4</xref></sup> Duplin and neighboring Sampson Counties, the two largest hog-producing counties in the United States, are home to about 4 million hogs that generate about half of the state&#x02019;s hog waste.<sup><xref rid="R5" ref-type="bibr">5</xref></sup> This waste is often stored in open pit lagoons and distributed over agricultural sprayfields nearby.<sup><xref rid="R2" ref-type="bibr">2</xref>,<xref rid="R5" ref-type="bibr">5</xref>,<xref rid="R6" ref-type="bibr">6</xref></sup></p><p id="P4">Fecal material can be dispersed through air and runoff contaminating surface waters and watersheds nearby sprayfields and swine operations, but there is no acknowledgement of any air emissions from facilities. The NC Department of Environment and Natural Resources (NC DENR) permits swine concentrated animal feeding operations (CAFOs) as water non-discharge facilities. Measurements of surface waters near ILOs in NC showed poor water quality overall and higher swine fecal contamination downstream compared to upstream of ILOs.<sup><xref rid="R7" ref-type="bibr">7</xref></sup> To assess swine fecal contamination in water, the researchers had used the microbial source-tracking<sup><xref rid="R8" ref-type="bibr">8</xref></sup> marker Pig-2-Bac. Pig-2-Bac is a genomic DNA marker targeting <italic toggle="yes">Bacteroidales,</italic> pig-specific gut microbe. <italic toggle="yes">Bacteroidales</italic> are anaerobic bacteria that decay rapidly under aerobic conditions, i.e. outside of the hog&#x02019;s gut, and are excellent candidates for host-specific fecal source tracking. Pig-2-Bac has been in use since 2009 and was evaluated by two independent studies, both showing 100% sensitivity and 100% specificity to swine feces.<sup><xref rid="R9" ref-type="bibr">9</xref>,<xref rid="R10" ref-type="bibr">10</xref></sup></p><p id="P5">ILOs housing thousands of animals in confined spaces also release a variety of air pollutants including ammonia, hydrogen sulfide, particulate matter (PM), and volatile organic compounds into the environment, which can pose health risks to nearby residents.<sup><xref rid="R11" ref-type="bibr">11</xref>&#x02013;<xref rid="R15" ref-type="bibr">15</xref></sup> Several studies have found that increased malodor and ammonia, hydrogen sulfide and PM were associated with adverse health effects among residents living near ILOs. Health effects described in these studies include symptoms of depression, anger and fatigue<sup><xref rid="R16" ref-type="bibr">16</xref></sup>, headaches and nausea<sup><xref rid="R14" ref-type="bibr">14</xref></sup>, increased acute blood pressure<sup><xref rid="R17" ref-type="bibr">17</xref></sup> and adverse respiratory outcomes including asthma among both adults and children.<sup><xref rid="R12" ref-type="bibr">12</xref>,<xref rid="R18" ref-type="bibr">18</xref>&#x02013;<xref rid="R20" ref-type="bibr">20</xref></sup> Two large case-control studies analyzing clinical health records and found that living in proximity to sprayfields and to ILOs was associated with increased odds of methicillin-resistant <italic toggle="yes">Staphylococcus aureus</italic> (MRSA) infection, skin and soft tissue infections and higher all-cause mortality and infant mortality.<sup><xref rid="R21" ref-type="bibr">21</xref>&#x02013;<xref rid="R23" ref-type="bibr">23</xref></sup> Residents living near ILOs report poorer health and reduced quality of life<sup><xref rid="R24" ref-type="bibr">24</xref>&#x02013;<xref rid="R26" ref-type="bibr">26</xref></sup> and have expressed concerns that, in addition to malodor, swine fecal matter may find its way into their homes. Swine fecal material from these operations could also be a vehicle for pathogens, including zoonotic viruses and antibiotic-resistant bacteria, and other contaminants like endotoxins<sup><xref rid="R27" ref-type="bibr">27</xref></sup> that may impact residents&#x02019; health.<sup><xref rid="R28" ref-type="bibr">28</xref></sup> Even though evidence of swine fecal contamination on the outside walls of homes neighboring ILOs was presented in a nuisance trial against industrial hog corporations in North Carolina<sup><xref rid="R28" ref-type="bibr">28</xref></sup>, no research study has examined whether swine fecal matter enters the homes of community residents living near ILOs.</p><p id="P6">Using Pig-2-Bac as a swine-specific fecal source-tracking marker, the goals of this study were to investigate (1) whether swine fecal matter contaminates indoor and outdoor household surfaces of ILO worker homes, residents living near ILOs without occupational livestock exposure, and residents of metropolitan areas in NC; and (2) how spatial proximity to swine operations is related to household Pig-2-Bac contamination.</p></sec><sec id="S2"><label>2.</label><title>Methods</title><sec id="S3"><label>2.1</label><title>Study population and location</title><p id="P7">This study was conducted in collaboration between community organizers from the Rural Empowerment Association for Community Help (REACH) and researchers from the Johns Hopkins Bloomberg School of Public Health. We completed a pilot cross-sectional study between November 2017 and April 2018 (Study A), followed by a larger cross-sectional study between February 2021 and December 2022 (Study B). Both studies employed a snowball sampling approach, as described previously.<sup><xref rid="R29" ref-type="bibr">29</xref></sup> For Study A, households within a 10-km radius of a swine ILO in Duplin, Sampson or Bladen County, NC were eligible. Two types of households were enrolled: a) ILO worker (ILO-W) households with at least one adult (&#x02265;18 years of age) ILO worker; and b) ILO neighbor (ILO-N) households without occupational livestock exposure (including animal processing or rendering plants) within the last 12 months.<sup><xref rid="R30" ref-type="bibr">30</xref></sup> For Study B, the area of enrollment was enlarged and three types of households were eligible: 1) ILO-W households; 2) ILO-N households located near ILOs in livestock-dense regions of NC without occupational exposure to ILOs; and 3) Metro households in metropolitan areas of NC, including Raleigh, Durham, Chapel Hill, Greensboro, Charlotte and Wilmington, also without occupational exposure to ILOs as comparison group. At least one adult (&#x02265;18 years) participant in each household provided consent to participate in these studies. <xref rid="F1" ref-type="fig">Figure 1</xref>, made in collaboration with our community partners to protect the identities of participants, depicts the enrollment areas of both studies.</p></sec><sec id="S4"><label>2.2</label><title>Surface swab and questionnaire data collection</title><p id="P8">Upon enrollment, participants responded to a baseline questionnaire administered by a community organizer or researcher. The baseline questionnaire assessed demographic information (self-reported age, sex, race/ethnicity, etc.), household-level and individual-level characteristics, occupation, job-related activities, and other non-job-related activities that could lead to livestock exposure. Household surface settled dust sampling was performed by community organizers (Study A) or by household members during the COVID-19 pandemic (Study B). In study B, community organizers instructed household members on how to collect a surface swab and community members then walked participants through the sampling procedure while on video call (FaceTime [Apple, Cupertino, CA]; Zoom [Zoom Video Communications, San Jose, CA], or other video conferencing applications).</p><p id="P9">Household surface settled dust samples in Study A were collected using standardized 12 in<sup>2</sup> templates on up to six indoor and six outdoor surfaces at each participating household. In Study B household surfaces were sampled by participants using standardized 10 cm<sup>2</sup> templates on two indoor and two outdoor surfaces. To account for the different surface areas sampled in Study A and B, Pig-2-Bac DNA copy number per in<sup>2</sup> is reported. Participants or organizers swabbed the surface horizontally and vertically in an &#x0201c;S&#x0201d; shaped pattern across the entire square surface with a sterile flocked swab (ESwab, COPAN Diagnostics Inc., Murrieta, CA) (<xref rid="SD2" ref-type="supplementary-material">Figure S1</xref>). After sampling, swabs were stored in 1 mL Amies buffer and kept refrigerated until shipment to the researchers&#x02019; laboratory. The average time from sample collection to receipt in the researchers&#x02019; laboratory was 2 days in Study A and 5 days in Study B. Outdoor samples were collected from the A/C unit, vinyl/plank siding of residence, shed/roof overhang, window casing, underside of the porch or door casing. Indoor samples were collected from the A/C air intake or vent, top of the refrigerator, windowsill, chair headrest, top of TV/TV remote, or the refrigerator handle. For objects like the refrigerator handle and TV remote, the whole object (front and back) was swabbed and the area was estimated. Each household collected one outdoor and one indoor blank by briefly opening one swab outside and one swab inside the residence and placing the swabs directly into the Amies medium without touching any surfaces.</p></sec><sec id="S5"><label>2.3</label><title>Quantification of Pig-2-Bac DNA</title><p id="P10">We followed the Minimum Information for Publication of Quantitative Real-Time PCR Experiments (MIQE) guidelines during analysis, the sequence information for primers and probes can be found in <xref rid="SD2" ref-type="supplementary-material">Table S1</xref>.<sup><xref rid="R31" ref-type="bibr">31</xref></sup> To quantify Pig-2-Bac DNA, 100 &#x003bc;L of each surface sample Amies medium was used for DNA extraction with a MagNA Pure LC 2.0 instrument (Roche, Basel, Switzerland). The DNA Isolation Kit III (Bacteria, Fungi) (Roche, Basel, Switzerland) was used according to manufacturer&#x02019;s instructions. Prior to extraction, each sample was spiked with 0.167 &#x003bc;L of mouse cDNA (Mouse Balbc Lung Total RNA, Zyagen, San Diego, CA) as a specimen processing control (SPC). DNA extracts were then assessed by real-time quantitative polymerase chain reaction (qPCR) for Pig-2-Bac DNA. Each well contained 5&#x003bc;L of DNA extract as a template in each 20 &#x003bc;L qPCR reaction in addition to 10&#x003bc;L of 2x reaction mix (TaqMan Fast Advanced Master Mix, Applied Biosystems, Foster City, CA), 500 nM Pig-2-Bac forward and reverse primer, and 250 nM probe.<sup><xref rid="R10" ref-type="bibr">10</xref></sup> All samples were analyzed on a QuantStudio 3 Real-Time PCR system (Applied Biosystems, Foster City, CA) using 40 amplification cycles. Each amplification cycle consisted of a denaturing step (15s at 95&#x000b0;C), an annealing step (20s at 60&#x000b0;C) and an extension step (20s at 60&#x000b0;C). A five-point quantitative standard curve using double stranded DNA fragments containing the Pig-2-Bac DNA sequence with known DNA copy number, ranging from 300,000 copies to 30 copies, was included on every plate in duplicate (custom-made gBlocks, Integrated DNA Technologies, Coralville, IA). In addition, two wells of nuclease-free water were included on each qPCR plate as a negative control. A separate qPCR assay using a mouse beta actin DNA sequence (Mouse ACTB [Actin, Beta]) Endogenous Control (FAM Dye/MGB probe, Non-Primer Limited, Applied Biosystems, Waltham, MA) to detect the previously spiked in mouse cDNA (SPC) was performed to ensure DNA extraction was successful. Additionally, an internal amplification control qPCR assay (IAC) was performed to assess potential inhibition in each DNA extract (PrimePCR Positive Control Probe Assay, Human, Bio-Rad, Hercules, CA). Control DNA was amplified using the same thermal cycling conditions as for the Pig-2-Bac DNA qPCR. Copy numbers per swab (1 mL) were calculated by multiplying the copy number per reaction (5uL extracted DNA template) by 200. Copy numbers per surface swab were divided by the area of the household surface settled dust template used in inches squared (in<sup>2</sup>), to obtain the Pig-2-Bac DNA copy number per in<sup>2</sup>.</p></sec><sec id="S6"><label>2.4</label><title>Spatial analysis</title><p id="P11">Home addresses of participants were recorded during enrollment. Addresses were geolocated for further analysis, generating a single point based on the centroid for the property. Out of the 293 households included in this study, 42 (14%) households (30 ILO-W, 10 ILO-N and 2 Metro households) did not have addresses that could be geocoded. Further, in Study B, 30 out of 105 households in the ILO-W group did not have an address that could be geocoded and had to be excluded from spatial analyses. Study B households with and without spatial data had similar prevalences of Pig-2-Bac DNA detection, both indoors and outdoors and between study groups (<xref rid="SD2" ref-type="supplementary-material">Table S2</xref>).</p><p id="P12">Swine concentrated animal feeding operation (CAFO) location coordinates and operation information, such as permit type, allowable hog count and steady state live weight (SSLW) were obtained from records of permitted North Carolina swine facilities operating in 2015 from the publicly available animal operation facilities map from the North Carolina Division of Water Quality (DWQ).<sup><xref rid="R32" ref-type="bibr">32</xref></sup> Data from 2015 were used as it is a better representation of the swine population during our study time period (2017&#x02013;2022). Industrial hog operations are defined as feedlots with more than 250 swine and liquid waste management systems.<sup><xref rid="R33" ref-type="bibr">33</xref></sup> Facilities report information on the number of hogs, hog species and life stage, as well as coordinates of the facility and the name of the corporate integrator. The steady state live weight (SSLW) of each facility, used in the estimate of swine spatial intensity, is calculated by DWQ using the number of hogs of each type and life stage and the average weight for that life stage. This spatial analysis used data from 2,190 permitted swine CAFOs.</p><p id="P13">Three different spatial analysis methods were used to categorize exposure to swine fecal waste and intensity of swine production. First, buffers of 5 kilometers (km), 3 km and 1 km were created around each geocoded household. Counts of swine CAFOs that fell within each distance buffer were calculated as one measure of exposure to swine CAFOs. Second, the Euclidean distance between each household and the nearest swine CAFO was used. Third, a swine CAFO intensity variable to indicate swine production intensity (SPI) exposure value was calculated for each household using the summed inverse-distance weighted (IDW) exposure described by <xref rid="FD1" ref-type="disp-formula">equation 1</xref>:
<disp-formula id="FD1"><label>[1]</label><mml:math id="M1" display="block"><mml:mi>S</mml:mi><mml:mi>w</mml:mi><mml:mi>i</mml:mi><mml:mi>n</mml:mi><mml:mi>e</mml:mi><mml:mspace width="0.2em"/><mml:mi>p</mml:mi><mml:mi>r</mml:mi><mml:mi>o</mml:mi><mml:mi>d</mml:mi><mml:mi>u</mml:mi><mml:mi>c</mml:mi><mml:mi>t</mml:mi><mml:mi>i</mml:mi><mml:mi>o</mml:mi><mml:mi>n</mml:mi><mml:mspace width="0.2em"/><mml:mi>i</mml:mi><mml:mi>n</mml:mi><mml:mi>t</mml:mi><mml:mi>e</mml:mi><mml:mi>n</mml:mi><mml:mi>s</mml:mi><mml:mi>i</mml:mi><mml:mi>t</mml:mi><mml:mi>y</mml:mi><mml:mspace width="0.2em"/><mml:mi>e</mml:mi><mml:mi>x</mml:mi><mml:mi>p</mml:mi><mml:mi>o</mml:mi><mml:mi>s</mml:mi><mml:mi>u</mml:mi><mml:mi>r</mml:mi><mml:mi>e</mml:mi><mml:mspace width="0.2em"/><mml:mi>f</mml:mi><mml:mi>o</mml:mi><mml:mi>r</mml:mi><mml:mspace width="0.2em"/><mml:mi>h</mml:mi><mml:mi>o</mml:mi><mml:mi>u</mml:mi><mml:mi>s</mml:mi><mml:mi>e</mml:mi><mml:mi>h</mml:mi><mml:mi>o</mml:mi><mml:mi>l</mml:mi><mml:mi>d</mml:mi><mml:mspace width="0.2em"/><mml:mi>j</mml:mi><mml:mo>=</mml:mo><mml:munderover accent="false" accentunder="false"><mml:mo>&#x02211;</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn>1</mml:mn></mml:mrow><mml:mi>n</mml:mi></mml:munderover><mml:mfrac><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msubsup><mml:mi>d</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow><mml:mn>2</mml:mn></mml:msubsup></mml:mrow></mml:mfrac></mml:math>
</disp-formula>
where n is the number of swine CAFOs, a<sub>i</sub> is the SSLW of the swine CAFO <italic toggle="yes">i</italic>, and <italic toggle="yes">d<sub>ij</sub><sup>2</sup></italic> is the distance squared between the swine CAFO <italic toggle="yes">i</italic> and household <italic toggle="yes">j</italic>.<sup><xref rid="R23" ref-type="bibr">23</xref></sup> The SPI values were log<sub>10</sub> transformed since it was not normally distributed. The same summed IDW method was also used on a 1.6 km resolution grid across the state for visualization purposes. Spatial data management and map construction were conducted in ArcGIS Pro version 2.9.5 (Esri 2021<sup><xref rid="R34" ref-type="bibr">34</xref></sup>) and R (version 4.2.2, R Foundation for Statistical Computing, Vienna, Austria<sup><xref rid="R35" ref-type="bibr">35</xref></sup>).</p></sec><sec id="S7"><label>2.5</label><title>Statistical analysis</title><p id="P14">All qPCR Pig-2-Bac DNA copy number estimates per in<sup>2</sup> were log<sub>10</sub> transformed prior to analysis. Our outcomes of interest were Pig-2-Bac DNA detection on at least one surface (outdoors and indoors) and log<sub>10</sub> Pig-2-Bac DNA copy number per in<sup>2</sup>. The lowest detected value in our sample set was 8.6 copies per sample. We defined the limit of detection of our assay at half of this value (4.3 copies per sample), which was imputed for swabs without detectable Pig-2-Bac DNA. We performed a sensitivity analysis using two additional imputation values (2.15 copies per sample; and 0.1 copies per sample) to test the robustness of the associations between: 1) distance to nearest swine CAFO in km; 2) swine production intensity (SPI) value; and 3) household group with the change in log<sub>10</sub> Pig-2-Bac DNA copy number per in<sup>2</sup>. Differences in the beta coefficient and 95% confidence interval estimates were minimal when the lower limit of detection imputed value was decreased. With similar estimates across imputation values, we selected 4.3 copies per sample, half the lowest detected Pig-2-Bac DNA copy number per sample (8.6 copies) (<xref rid="SD2" ref-type="supplementary-material">Table S3</xref>).</p><p id="P15">The SPI values were evaluated as a continuous variable. Questions that assessed work in ILOs (CAFOs, processing plants, rendering facilities) and a composite binary variable that used reported occupation title, reported hog contact, and reported poultry contact to assess occupational hog or poultry exposure were used in models that explored associations between Pig-2-Bac outcomes of interest and potential occupational exposures. Questions used to gather information about personal protective equipment (PPE) use at work and habits surrounding its use were used to create binary variables for PPE use at work and for bringing PPE home after work.</p><p id="P16">To explore differences in SPI, Pig-2-Bac copy number per in<sup>2</sup> and number of CAFOs between household type, a Mann-Whitney U test was used since the distributions of these variables were skewed. We used logistic regression models to estimate the odds ratios (OR) and 95% confidence intervals (CIs) of associations between swine spatial variables (intensity and distance to nearest swine CAFO), sampling location, household type, occupational factors and presence or absence of Pig-2-Bac. We used linear regression models to estimate &#x003b2; coefficients and 95% CIs of the associations between swine spatial variables (distance to nearest swine CAFO and SPI), sampling location (outdoor vs indoor), household type (ILO-W, ILO-N vs Metro), and occupational factors with log<sub>10</sub> Pig-2-Bac DNA copy number per in<sup>2</sup> estimates. To account for repeated measures and non-independence of multiple swabs at each household, we used generalized estimating equations (GEE) with an exchangeable working correlation. To account for any potential confounding due to differences between Study A and B, logistic and linear regression models were adjusted for Study A vs. Study B as a binary independent variable. To explore the impact occupational swine exposure could have on associations between SPI and Pig-2-Bac outcomes, the ILO-W group was stratified into ILO workers with vs. without occupational swine exposure (<xref rid="SD2" ref-type="supplementary-material">Table S4</xref> and <xref rid="SD2" ref-type="supplementary-material">S5</xref>). However, due to the small number of non-swine workers, the primary analyses presented involve pooling of ILO-W with and without occupational exposure to swine. To explore the potential influence of season of swab collection on associations (<xref rid="SD2" ref-type="supplementary-material">Table S6</xref>), models examining the association of distance to nearest swine CAFO and SPI with Pig-2-Bac DNA detection were adjusted for season in addition to Study A vs Study B (<xref rid="SD2" ref-type="supplementary-material">Table S7</xref>). Since we found minimal changes in magnitude or precision of estimates when adjusting for season, we chose to omit season in the primary analysis. To explore the potential influence of study designation on associations, we estimated the association of distance to nearest swine CAFO and SPI with Pig-2-Bac DNA detection for each study independently (<xref rid="SD2" ref-type="supplementary-material">Table S8</xref> and <xref rid="SD2" ref-type="supplementary-material">S9</xref>). Since we found minimal changes in precision of estimates, we chose to present the pooled estimates of both Study A and Study B, while adjusting for study. Because this was not a randomized study, statistical significance cannot be interpreted as the probability that observed difference would occur by chance if there were no difference between groups being compared. However, 95% confidence intervals (CIs) are presented for easy comparison with other studies. All analyses were performed in R (version 4.2.2, R Foundation for Statistical Computing, Vienna, Austria<sup><xref rid="R35" ref-type="bibr">35</xref></sup>).</p></sec><sec id="S8"><label>2.6</label><title>Ethics Statement</title><p id="P17">Both studies were a collaboration between the Johns Hopkins Bloomberg School of Public Health (BSPH) and REACH. The BSPH Institutional Review Board approved both studies (IRB00014420 and IRB00005253). Before participation, adult participants provided written or oral informed consent.</p></sec></sec><sec id="S9"><label>3.</label><title>Results</title><sec id="S10"><label>3.1</label><title>Participant Characteristics</title><p id="P18">Two hundred and ninety-three households participated in this study. Of those, 105 were industrial livestock operation worker (ILO-W) households, 107 were ILO neighbor (ILO-N) households, and 81 were NC metropolitan area (Metro) households (<xref rid="T1" ref-type="table">Table 1</xref>). Among the 293 households, 38 were enrolled between 2017 and 2018, and 255 were enrolled between 2021 and 2022 (<xref rid="T1" ref-type="table">Table 1</xref>). Across all household groups, the majority of participants identified as Black/African American (83% overall) (<xref rid="SD2" ref-type="supplementary-material">Table S10</xref>). The mean distance to nearest swine CAFO was similar between the ILO-W group (3.59 km) and the ILO-N group (2.92 km), whereas the mean distance of Metro households to nearest swine CAFO was significantly larger (18.05 km; <xref rid="T1" ref-type="table">Table 1</xref>). ILO-N households had more swine CAFOs within a 5 km radius of their home with a mean of 12.26 swine CAFOs, compared to 9.60 swine CAFOs in the ILO-W group (<xref rid="T1" ref-type="table">Table 1</xref>). In both studies, ILO-W and ILO-N households were located in overlapping regions of North Carolina. Although participation criteria were slightly different, household characteristics were similar. Among the 105 ILO-W households, 71% (75/105) reported occupational swine exposure and 26% (27/105) reported occupational chicken exposure. Most of the participants enrolled in the worker group worked in livestock production (raising livestock) (74%, 78/105) compared to working in livestock processing and rendering plants (21%, 22/105). Ninety-nine percent of workers reported using some form of personal protective equipment (PPE), including face, eye, hand and foot protection. Over half (65%) of workers report bringing some PPE home from their work (<xref rid="SD2" ref-type="supplementary-material">Table S11</xref>).</p></sec><sec id="S11"><label>3.2</label><title>Pig-2-Bac DNA Detection at the Household- and Swab-Level</title><p id="P19">Among the 293 enrolled households, 30% (88 households) had at least one positive Pig-2-Bac surface, either indoors or outdoors. ILO-N households had the highest proportion of Pig-2-Bac detected on at least one surface, 44% (47/107 households), followed by ILO-W households (38%, 40/105 households) (<xref rid="T1" ref-type="table">Table 1</xref>). Out of the 1,456 swabs collected, 42 swabs (~3%) had insufficient sample volume for testing due to leakage during shipment. Out of 1,414 surface swabs analyzed 695 (49%) were outdoor and 719 (51%) were indoor samples (<xref rid="T2" ref-type="table">Table 2</xref>). ILO-W household samples had the highest prevalence of Pig-2-Bac DNA detection (30%), followed by ILO-N household samples (25%); only one Metro household sample (1%) tested positive for Pig-2-Bac. The ILO-W and ILO-N groups contributed approximately the same number of swabs, 536 swabs and 557 swabs respectively, while the Metro group contributed fewer swabs overall (321 swabs) (<xref rid="T2" ref-type="table">Table 2</xref>). Twenty-one percent of all swabs collected, both indoors and outdoors, were Pig-2-Bac positive. Among all outdoor swabs, 26% (179/695) were positive; 35% (91/262) for the ILO-W group, 32% (87/273) for the ILO-N group, and 0.1% (1/160) for the Metro group were positive (<xref rid="T2" ref-type="table">Table 2</xref>). Among the indoor swabs, 17% (123/719) were positive overall; 28% (68/247) for the ILO-W group, 19% (55/284) for the ILO-N group, and 0% (0/161) for the Metro group were positive. The ILO-N group had the highest mean Pig-2-Bac DNA copy number per in<sup>2</sup> 63.85 copies (SD = 868.48) followed by the ILO-W group with a mean of 35.75 copies per in<sup>2</sup> (SD = 131.17), and lastly the Metro group with a mean of 0.63 copies per in<sup>2</sup> (SD = 7.06). All three household groups had higher Pig-2-Bac copy numbers per in<sup>2</sup> on outdoor surfaces compared to indoor surfaces (<xref rid="T2" ref-type="table">Table 2</xref>).</p></sec><sec id="S12"><label>3.3</label><title>Associations between Pig-2-Bac DNA Detection and Swab Location</title><p id="P20">ILO-W households with any livestock exposure, ILO-W households with occupational swine exposure, and ILO-N households all had elevated odds of Pig-2-Bac DNA detection on outdoor compared to indoor surfaces. The only Pig-2-Bac positive surface detected in the Metro group (n = 1/321) was an outdoor surface. Outdoor surfaces were 2.2 (95% CI = 1.6, 3.0) times more likely to test Pig-2-Bac positive than indoor surfaces across all household groups (<xref rid="T3" ref-type="table">Table 3</xref>). The odds of Pig-2-Bac DNA detection outdoors compared to indoors was 2.1 (95% CI = 1.3, 3.3) in the ILO-W group and 2.4 (95% CI = 1.5, 3.8) in the ILO-N group. Outdoor surfaces harbored 0.30 log<sub>10</sub> Pig-2-Bac DNA copy numbers more per in<sup>2</sup> (95% CI = 0.19, 0.41) than indoor surfaces. This trend was consistent for the ILO-W households (&#x003b2; = 0.33; 95% CI = 0.14, 0.51) and the ILO-N households (&#x003b2; = 0.36; 95% CI = 0.16, 0.57) (<xref rid="T3" ref-type="table">Table 3</xref>). The single Metro household Pig-2-Bac DNA positive sample from an outdoor surface contained 2029.2 Pig-2-Bac DNA copies per in<sup>2</sup>. Among outdoor surfaces, ILO-W and ILO-N Pig-2-Bac positivity was similar (OR = 1.1, 95% CI = 0.7, 1.9), but among indoor surfaces, Pig-2-Bac was higher in ILO-W compared to ILO-N households (OR = 1.5, 95% CI = 0.9, 2.5).</p></sec><sec id="S13"><label>3.4</label><title>Associations between Pig-2-Bac DNA Detection and Study Group Assignment</title><p id="P21">We also examined associations of Pig-2-Bac DNA presence and quantity with household study group and sampling location (outdoor versus indoor). ILO-W household surfaces were 40.1 times (95% CI = 5.5, 293) more likely and ILO-N household surfaces were 31.2 times (95% CI = 4.3, 228) more likely to contain Pig-2-Bac traces than Metro household surfaces (<xref rid="SD2" ref-type="supplementary-material">Table S12</xref>). Compared to the Metro household surfaces, the Pig-2-Bac concentration on ILO-W household surfaces was 0.39 copies (95% CI = 0.19, 0.42) higher per in<sup>2</sup> and 0.23 copies (95% CI = 0.12, 0.34) higher on ILO-N household surfaces (<xref rid="SD2" ref-type="supplementary-material">Table S12</xref>).</p></sec><sec id="S14"><label>3.5</label><title>Associations between Occupational Swine Exposure Among ILO-W Participants and Pig-2-Bac DNA Detection</title><p id="P22">We also examined the effect of occupational swine exposure on Pig-2-Bac presence and quantity indoors and outdoors. Pig-2-Bac was more frequently detected outdoors at ILO-W households who reported working with swine (42%, 85/205) compared to ILO-W households who reported work with other animals (11%, 6/57). Indoor surfaces of households with swine exposure were 8.3 (95% CI = 1.9, 35.2) times more likely to test Pig-2-Bac positive than indoor surfaces other livestock worker households (<xref rid="SD2" ref-type="supplementary-material">Table S13</xref>). Swine worker compared to other livestock worker households were also more likely to test Pig-2-Bac positive outdoors (OR = 3.4, 95% CI = 1.2, 9.7), although this difference was less pronounced (<xref rid="SD2" ref-type="supplementary-material">Table S13</xref>). The difference in Pig-2-Bac DNA copy number per in<sup>2</sup> was similar between outdoor (&#x003b2; = 0.30, 95% CI = &#x02212;0.04, 0.64) and indoor (&#x003b2; = 0.33, 95% CI = 0.11, 0.56) surfaces, comparing those with occupational swine exposure to those without (<xref rid="SD2" ref-type="supplementary-material">Table S14</xref>). Wearing any PPE at work decreased the odds of Pig-2-Bac detection outdoors (OR= 0.4, 95% CI = 0.1, 2.9), comparing those who wore any PPE at work to those who did not wear any PPE at work. Taking any PPE home from work compared to leaving PPE at work, increased the odds of Pig-2-Bac DNA detection both on outdoor (OR = 1.8, 95% CI = 0.7, 4.4) and indoor surfaces (OR = 1.5, 95% CI = 0.6, 3.5) (<xref rid="SD2" ref-type="supplementary-material">Table S15</xref>). Differences in mean Pig-2-Bac DNA copy number per in<sup>2</sup> reflected these trends (<xref rid="SD2" ref-type="supplementary-material">Table S16</xref>).</p></sec><sec id="S15"><label>3.6</label><title>Associations between Pig-2-Bac DNA Detection and Swine Production Intensity (SPI)</title><p id="P23">We examined associations of Pig-2-Bac DNA detection with different measures of the intensity of exposure to swine CAFOs. The SPI values were highest in the southeastern portion of North Carolina (<xref rid="F1" ref-type="fig">Figure 1</xref>). Mean SPI exposure was 6.26, 6.31, and 4.89 in the ILO, ILO-N, and Metro household groups, respectively (<xref rid="T1" ref-type="table">Table 1</xref>). Among all households, each 1 log<sub>10</sub> increase in SPI was associated with a 5.4-fold (95% CI = 2.8, 10.4) higher likelihood of Pig-2-Bac DNA detection on all household surfaces (<xref rid="T4" ref-type="table">Table 4</xref>). Each log<sub>10</sub> increase in SPI among ILO-W households was associated with a 13.1-fold (95% CI = 2.8, 60.2) higher likelihood for Pig-2-Bac detection; ILO-N household surfaces were 2.2 (95% CI = 0.7, 7.2) times more likely to harbor Pig-2-Bac contamination with each log<sub>10</sub> increase in SPI (<xref rid="T4" ref-type="table">Table 4</xref>). Among the ILO-W households, those with occupational swine exposure were 10.4 (95% CI = 2.5, 43.4) more likely to have Pig-2-Bac DNA on any household surface with each unit increase in SPI (<xref rid="SD2" ref-type="supplementary-material">Table S5</xref>). Each 1 log<sub>10</sub> unit increase in SPI was associated with an increase of 0.21 Pig-2-Bac DNA copies per in<sup>2</sup> (95% CI = 0.13, 0.29) among all households combined and a 0.68 copies per in<sup>2</sup> increase (95% CI = 0.21, 1.14) among ILO-W households (<xref rid="T5" ref-type="table">Table 5</xref>). The increase in Pig-2-Bac DNA copy number per in<sup>2</sup> per SPI unit was highest among workers with self-reported occupational swine exposure (&#x003b2; = 0.72, 95% CI = 0.18, 1.26) (<xref rid="SD2" ref-type="supplementary-material">Table S5</xref>). These associations are also represented in <xref rid="F2" ref-type="fig">Figure 2</xref> for visual comparison. Increasing SPI exposure was associated with higher Pig-2-Bac DNA copy number per in<sup>2</sup> across all household surfaces at ILO-W and ILO-N households. This trend was more pronounced outdoors compared to indoors (<xref rid="F3" ref-type="fig">Figure 3</xref>). Detection of Pig-2-Bac DNA on household surfaces was most strongly associated with the number of swine CAFOs within a 1km buffer surrounding each household among the ILO-W group (OR = 1.8, 95% CI = 1.2, 2.9), followed by the number of swine CAFOs within a 3km buffer (<xref rid="SD2" ref-type="supplementary-material">Table S17</xref>), demonstrating that swine CAFOs in closer proximity to residences increase the odds of Pig-2-Bac DNA detection. The magnitude of increase in Pig-2-Bac DNA copies per in<sup>2</sup> was highest when estimating associations with the number of swine CAFOs within a 1km buffer, but the direction of the association was consistent albeit lower in magnitude when considering all CAFOs within a 3km or 5km buffer zone (<xref rid="SD2" ref-type="supplementary-material">Table S18</xref>).</p></sec></sec><sec id="S16"><label>4.</label><title>Discussion</title><p id="P24">The results of our study suggest that swine fecal matter from swine CAFOs is contributing to the contamination of indoor and outdoor household surfaces of nearby community residents. The Pig-2-Bac prevalence was highest in the ILO-N group (44% or 47/107 households had &#x02265;1 Pig-2-Bac DNA positive surface), followed by the ILO-W group (38%; 40/105 households with &#x02265;1 Pig-2-Bac DNA positive surface), and lowest in the Metro group (1%; 1/81 households). At the swab level, Pig-2-Bac was most frequently detected in ILO-W household surface samples (30% Pig-2-Bac positive) followed by ILO-N household surface samples (25% Pig-2-Bac positive), with only a single outdoor surface from a Metro household that tested positive (0.3%). We observed higher Pig-2-Bac prevalence outdoors compared to indoors, but no significant difference between ILO-W and ILO-N household outdoor surfaces (ILO-W: 91/262 [35%]; ILO-N: 87/273 [32%]). We did see higher detection frequency on ILO-W compared to ILO-N indoor surfaces (ILO-W: 68/247 [28%]; ILO-N: 55/284 [19%]). Significantly more ILO-W and ILO-N households had &#x02265;1 Pig-2-Bac positive outdoor compared to indoor surface. This suggests an environmental source of Pig-2-Bac and that ILO work take home exposure could contribute to the presence of Pig-2-Bac indoors among ILO-W households, e.g., through shoes worn during ILO work or other PPE that is brought home. Higher swine production intensity and the number of ILOs within a 1- or 3-km radius of the home were correlated with significantly higher likelihood of Pig-2-Bac detection on household surfaces, respectively, indicating that areas of dense swine production are contributing the most swine fecal contamination to residents&#x02019; homes, including to homes of residents without any occupational exposure to swine.</p><p id="P25">The microbial source tracking marker Pig-2-Bac has been used to detect swine fecal contamination in water, nasal swabs and on surfaces.<sup><xref rid="R7" ref-type="bibr">7</xref>,<xref rid="R36" ref-type="bibr">36</xref>,<xref rid="R37" ref-type="bibr">37</xref></sup> Several studies have examined water quality in North Carolina and beyond using Pig-2-Bac as part of their assessment, e.g., Heaney et al. and Christenson et al. showed higher concentrations of swine fecal contamination in surface water and watersheds, respectively, downstream of swine CAFOs and sprayfields compared to upstream.<sup><xref rid="R7" ref-type="bibr">7</xref>,<xref rid="R38" ref-type="bibr">38</xref>&#x02013;<xref rid="R41" ref-type="bibr">41</xref></sup> Around the US and rest of the world, Pig-2-Bac has been detected in streams in the Ozarks<sup><xref rid="R40" ref-type="bibr">40</xref></sup>, rivers in France<sup><xref rid="R10" ref-type="bibr">10</xref></sup> and China<sup><xref rid="R41" ref-type="bibr">41</xref></sup>, as well as lakes in the Philippines<sup><xref rid="R38" ref-type="bibr">38</xref></sup>, indicating offsite migration of swine fecal waste. We previously examined Pig-2-Bac as a biomarker of recent occupational exposure to swine or swine waste.<sup><xref rid="R36" ref-type="bibr">36</xref></sup> Pig-2-Bac was present in 61% of nasal swabs of swine ILO workers and was found to decline in copy number with time away from hog ILO work. Pig-2-Bac in this context was used as a marker for recent human exposures to swine, demonstrating the utility of Pig-2-Bac outside of water contamination research.</p><p id="P26">In North Carolina, swine CAFOs are concentrated in the rural southeastern region of the state, which includes both rural and more urban areas from which some participants were recruited. Additionally, the cities of Raleigh and Charlotte have sub-urban portions of their metropolitan area that extend out into, and are adjacent to, areas that are closer to a swine CAFO and/or swine production-related activities such as swine trucking routes to pork processing facilities, which could explain the detection of Pig-2-Bac on the single outdoor surface that tested positive among the Metro household group.</p><p id="P27">Residents of color and low-income residents in southeastern North Carolina have long been disproportionately impacted by proximity of hog CAFOs,<sup><xref rid="R42" ref-type="bibr">42</xref>&#x02013;<xref rid="R47" ref-type="bibr">47</xref></sup> and have been vocal about the impact these facilities. Complaints of residents are often ignored or not taken seriously, but tools such as Pig-2-Bac MST can be used to validate and demonstrate the conditions neighbors experience, as was the case in past nuisance lawsuits against the swine industry.<sup><xref rid="R48" ref-type="bibr">48</xref></sup> In 2018, approximately 500 southeastern NC residents filed nuisance lawsuits against the industrial hog corporations that oversee these facilities with the argument that the environmental pollutant emissions, odor, flies, trucks and noise from these operations adversely affected their quality of life and health, thereby unreasonably interfering with their use and enjoyment of personal property.<sup><xref rid="R49" ref-type="bibr">49</xref>,<xref rid="R50" ref-type="bibr">50</xref></sup> While residents were successful in these trials, North Carolina lawmakers fought to make it more difficult for neighbors of these operations to sue industrial swine companies in the future.<sup><xref rid="R51" ref-type="bibr">51</xref>&#x02013;<xref rid="R54" ref-type="bibr">54</xref></sup> With the amendment of right-to-farm laws that further limited the already restricted recovery of damages in nuisance actions, the ability of residents to use legal action to fight against the multi-national corporations that pollute the air they breathe and the land they live on was severely limited, much to the dismay of the neighbors and the general public.<sup><xref rid="R55" ref-type="bibr">55</xref>,<xref rid="R56" ref-type="bibr">56</xref></sup></p><p id="P28">Strengths of this study include the use of spatial and molecular methods to assess swine fecal contamination and the inclusion of different household types (ILO-W, ILO-N, Metro) with varying swine production intensity exposure. The highly sensitive and specific Pig-2-Bac marker has been a proven way to estimate contamination with swine fecal filth,<sup><xref rid="R7" ref-type="bibr">7</xref>,<xref rid="R36" ref-type="bibr">36</xref></sup> and its application in this setting provides a quantitative way to substantiate neighbors&#x02019; complaints of contamination and quality-of-life disruption. This study provides scientific evidence for allegations of nuisance and adverse health impacts imposed on communities living in proximity of the hog farming industry in the United States, as in previous expert testimony in nuisance lawsuits that were successful for the neighbors of swine operations.<sup><xref rid="R48" ref-type="bibr">48</xref></sup></p><p id="P29">The use of spatial analysis techniques to assign SPI exposure values to each residence is another strength of this study. Previous studies have used community-level exposure to industrial food animal production in North Carolina, but few studies estimated nearby swine exposure at the household level using individual ILO characteristics to assign exposure burden. Often, CAFO exposure is measured to the census tract or census block, or is characterized by the distance between the residence and nearest CAFO.<sup><xref rid="R57" ref-type="bibr">57</xref>&#x02013;<xref rid="R59" ref-type="bibr">59</xref></sup> While these metrics are useful, the method employed in this study gives a more precise household-level estimate of SPI exposure. Other studies have also used an inverse distance weighted approach but didn&#x02019;t factor in life stage and waste impact of the animals. Using other spatial metrics, such as distance to nearest swine CAFO and number of swine CAFOs within household buffers of different sizes, we observed trends consistent with the more granular SPI metric. Additionally, our SPI metric could provide a surrogate measure of exposure to swine fecal material when lab methods are infeasible.</p><p id="P30">Limitations of this study include potential differences in swab collection technique between Study A and Study B. Community organizers and researchers at JHU made in-person home visits to collect surface samples in Study A, while a household member was trained to collect settled dust samples in Study B while on video call with a community organizer or study team member due to contact-less protocol requirements during the COVID-19 pandemic. In Study A (2017&#x02013;2018), a larger template was used for sample collection compared to in Study B (2021&#x02013;2022). The difference in template size between the studies could have led to an underestimate of detection prevalence in Study B. The time between sample collection and sample processing was shorter in Study A, which could have contributed to an underestimate of Pig-2-Bac in Study B, too. To adjust for the potential confounding influence of differences between Study A and B, study was included as covariate in all statistical models. Additionally, a sensitivity analysis was conducted (<xref rid="SD2" ref-type="supplementary-material">Table S8</xref> and <xref rid="SD2" ref-type="supplementary-material">S9</xref>) to examine outcomes for each study independently, which confirmed all trends observed after combining data from both studies. Additionally, swabs were collected at different times of the year. Differences in temperature, rainfall, UV exposure and other meteorological variables could affect the detection of Pig-2-Bac DNA. While swabs were collected during all seasons, the distribution was not equal across seasons (<xref rid="SD2" ref-type="supplementary-material">Table S6</xref>). Study A did not collect swabs during the summer, only Study B did, which led to fewer total swabs collected in summer. Study B also had lower detection frequencies and a lower mean Pig-2-Bac DNA copy number per in<sup>2</sup> overall, which could be why prevalence and quantity were lower in the summer. Although our overall findings were consistent even after including season as a covariate in regression models, future work should assess potential seasonal differences. Past studies that have reported temporal stability of Pig-2-Bac DNA did not necessarily test seasonal differences.<sup><xref rid="R10" ref-type="bibr">10</xref></sup> Future studies could also evaluate differences in Pig-2-Bac detection by surface type to assess if there are differences based on sampling location/orientation and surface material; surface material was not recorded here. Additionally, we were not sufficiently powered examine the effect of mask and other PPE usage, as most of the workers in our study reported PPE usage, including masks, at work. Lastly, information about swine CAFO lagoon waste sprayfields, trucking routes and other potential mechanisms of hog fecal movement were not collected and incorporated into the SPI in this study as they were not publicly available. Geospatial source data for the swine CAFO location from public permit records does not provide information about where the fecal waste from specific swine CAFOs is disposed of, such as sprayfield information. This could lead to an underestimate of associations between SPI and Pig-2-Bac, as a more refined SPI would incorporate sprayfields and locations of open swine waste lagoons. Additionally, future studies could incorporate updated swine CAFO permit location data, as there were issues with repeat coordinates of operations in the 2022 permit data that made use of that data not possible for spatial analysis. We chose to use the 2015 data due to completeness, the time period of Study A (2017/2018) and lack of significant difference in total swine production in NC.<sup><xref rid="R5" ref-type="bibr">5</xref>,<xref rid="R60" ref-type="bibr">60</xref></sup></p><p id="P31">Future studies should also assess contamination from other livestock industries in the area, particularly poultry. Incorporating poultry fecal contamination could provide a more complete picture of the cumulative effects of residential proximity and occupational intensity of exposure to industrial food animal production in North Carolina. In southeastern North Carolina, swine and poultry production are often co-located, contributing to the cumulative environmental burden of communities impacted by these CAFOs.<sup><xref rid="R61" ref-type="bibr">61</xref></sup> This combination of exposures could lead to increased risk of zoonotic disease transmission, particularly among those with contact to both swine and poultry and/or their waste products. The triangle of humans, swine and poultry is a potential biosecurity concern for epidemic and pandemic influenza reassortment as well as potential spillover and transmission of other pathogens between swine, poultry, and humans.<sup><xref rid="R62" ref-type="bibr">62</xref>&#x02013;<xref rid="R67" ref-type="bibr">67</xref></sup> Influenza has spilled over from swine to humans in the past, causing influenza epidemics and pandemics,<sup><xref rid="R63" ref-type="bibr">63</xref>,<xref rid="R68" ref-type="bibr">68</xref>&#x02013;<xref rid="R73" ref-type="bibr">73</xref></sup> and human-livestock contact can increase risk of pathogen and disease transmission.<sup><xref rid="R74" ref-type="bibr">74</xref></sup> Additionally, evidence of bioaerosol transmission, in particular transmission of infectious viruses, as far as tens of kilometers away from animal operations make understanding the extent of the cumulative exposure risks to community residents and their home environments important.<sup><xref rid="R75" ref-type="bibr">75</xref></sup></p><p id="P32">This study showed that that swine fecal material is present in household surface settled dust, more often and at higher levels on outdoor compared to indoor surfaces. Detection of Pig-2-Bac DNA on outdoor surfaces of residents&#x02019; homes living near hog CAFOs, whether in the ILO worker group or neighbor group, along with the near absence of Pig-2-Bac on Metro household surfaces, indicates that swine fecal material is very likely &#x02013; either directly from the operation or from nearby spray fields &#x02013; discharged from CAFOs, which are regulated as &#x0201c;non-discharge facilities&#x0201d; in NC. Migration of pig specific fecal <italic toggle="yes">Bacteroidales</italic>, a bacterium living in the pig digestive tract, is likely indicative of spillover of other zoonotic pathogens from ILOs onto nearby residents&#x02019; properties. While pig <italic toggle="yes">Bacteroidales</italic> may primarily be a nuisance, zoonotic viruses, antibiotic resistant bacteria, and fungi that are detrimental to human health are likely spread alongside. Characterizing such co-exposures would help close the gap between SPI and health effects that ILO neighbors and workers report and experience.</p></sec><sec id="S17"><label>5.</label><title>Conclusions</title><p id="P33">Our findings show that swine fecal matter is ubiquitous on household surfaces of communities in regions with high density swine production and suggest that fecal matter from swine CAFOs migrates offsite and contaminates the outdoor and &#x02013; to a lesser extent &#x02013; indoor home environments of those living nearby. This study contributes to the growing evidence that swine CAFOS, which are regulated as non-discharge facilities, can indeed contaminate off-site water, air, and land, including the private properties of nearby residents with swine fecal filth. The detection of swine fecal matter on community homes demonstrates the negative impact the vertically-integrated swine industry has on neighbors, providing scientific evidence in support of the community&#x02019;s lived experiences. Future studies should also include markers of poultry fecal contamination and measurements of air pollutants to better capture cumulative impacts of swine and poultry CAFO co-location along with measures of exposure and respiratory, enteric, and zoonotic infections to improve our understanding of adverse health effects related to industrial livestock production.</p></sec><sec sec-type="supplementary-material" id="SM1"><title>Supplementary Material</title><supplementary-material id="SD1" position="float" content-type="local-data"><label>1</label><media xlink:href="NIHMS2085613-supplement-1.png" id="d67e964" position="anchor"/></supplementary-material><supplementary-material id="SD2" position="float" content-type="local-data"><label>2</label><media xlink:href="NIHMS2085613-supplement-2.docx" id="d67e967" position="anchor"/></supplementary-material></sec></body><back><ack id="S18"><title>Acknowledgements</title><p id="P34">We would like to thank the community organizers at the Rural Empowerment Association for Community Help (REACH), especially Margaret Carr, Clesha Hall, Unique Hall, Angela Matthews, Arika Miller, Helen Santizo, Phyla Holmes, Norma Mejia, and Sherneka Smith. This study would not have been possible without the strong partnership that REACH has with members of communities in areas of dense industrial hog production. We would like to thank all the participants who agreed to be part of this study. We would also like to thank Will Hendrick for his review, input and sharing of informational resources during the drafting of the manuscript. We would also like to acknowledge Carly Ordak, Caryn Kok and Eric Xu for their assistance with household surface settled dust swab testing.</p><p id="P35">Funding for this study was provided in part by an anonymous gift and the E.W. &#x0201c;Al&#x0201d; Thrasher Award 10287 from the Thrasher Research Fund. KK and CDH were supported by the National Institute for Occupational Health and Safety (NIOSH) Education and Research Center (NIOSH ERC) grant T42 OH0008428. CDH and NP were supported by the Community Science and Innovation for Environmental Justice (CSI EJ) Initiative of the Johns Hopkins Center for a Livable Future, National Institute of Allergy and Infectious Diseases (NIAID) grant number R21 AI139784, and National Institute of Environmental Health Sciences (NIEHS) grant number R01ES026973.</p></ack><fn-group><fn id="FN1"><p id="P36">CRediT authorship contribution statement</p><p id="P37"><bold>Kathleen M Kurowski:</bold> Conceptualization, Methodology, Investigation, Data curation, Software, Formal analysis, Visualization, Writing &#x02013; original draft. <bold>Nora Pisanic:</bold> Conceptualization, Methodology, Investigation, Project administration, Writing &#x02013; review &#x00026; editing. <bold>Kristoffer Spicer:</bold> Data curation, Investigation, Project administration, Writing &#x02013; review &#x00026; editing. <bold>Kate Kruczynski:</bold> Data curation, Project administration, Writing &#x02013; review &#x00026; editing. <bold>Carolyn Gigot:</bold> Data curation, Project administration, Writing &#x02013; review &#x00026; editing. <bold>Devon J. Hall, Jr:</bold> Conceptualization, Investigation, Project administration, Writing &#x02013; editing &#x00026; reviewing. <bold>Devon J. Hall, Sr:</bold> Conceptualization, Investigation, Project administration, Writing &#x02013; editing &#x00026; reviewing. <bold>Kyle T. Aune:</bold> Methodology, Software, Writing &#x02013; review &#x00026; editing. <bold>Bonita Salmer&#x000f3;n:</bold> Methodology, Software, Writing &#x02013; review &#x00026; editing. <bold>Ana M. Rule:</bold> Methodology, Supervision, Writing &#x02013; review &#x00026; editing. <bold>Christopher D. Heaney:</bold> Conceptualization, Methodology, Project administration, Resources, Supervision, Writing &#x02013; review &#x00026; editing, Funding acquisition.</p></fn><fn fn-type="COI-statement" id="FN2"><p id="P38">Declaration of competing interest</p><p id="P39">The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.</p></fn><fn id="FN3"><p id="P40" content-type="publisher-disclaimer">This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. 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The vertical dashed line at 1 indicates the OR null value. <bold>(B)</bold> Each triangle represents the &#x003b2; coefficient for the change in log<sub>10</sub> Pig-2-Bac DNA copy number per in<sup>2</sup> and the line represents the 95% confidence interval. The vertical dashed line at 0 represents the &#x003b2; null value. In both figures, &#x0201c;ILO-W with swine exposure&#x0201d; refers to ILO-W participants who self-reported occupational swine exposure.</p></caption><graphic xlink:href="nihms-2085613-f0002" position="float"/></fig><fig position="float" id="F3"><label>Figure 3.</label><caption><p id="P42">Relation of log<sub>10</sub> swine production intensity (SPI) value and household-level mean Pig-2-Bac DNA copy number per in<sup>2</sup> on <bold>(A)</bold> all household surfaces, by household group; <bold>(B)</bold> on indoor surfaces, by household group; and <bold>(C)</bold> on outdoor surfaces, by household group. <bold><italic toggle="yes">Note.</italic></bold> All surfaces in each household were averaged for the all surfaces. Blue squares represent industrial livestock operation worker (ILO-N) households; solid blue line represents a line of best fit. Green triangles represent industrial livestock operation neighbor (ILO-W) households; dashed green line represents a line of best fit. Pink circles represent Metro households; dotted pink line represents line of best fit.</p></caption><graphic xlink:href="nihms-2085613-f0003" position="float"/></fig><table-wrap position="float" id="T1"><label>Table 1.</label><caption><p id="P43">Household-level distance to nearest swine CAFO, swine production intensity (SPI), and Pig-2-Bac DNA swab positivity overall and by household group and surface location (outdoor vs indoor), North Carolina, 2017 &#x02013; 2022.</p></caption><table frame="box" rules="all"><colgroup span="1"><col align="left" valign="middle" span="1"/><col align="left" valign="middle" span="1"/><col align="left" valign="middle" span="1"/><col align="left" valign="middle" span="1"/><col align="left" valign="middle" span="1"/></colgroup><thead><tr><th align="left" valign="top" rowspan="1" colspan="1"/><th align="center" valign="top" rowspan="1" colspan="1">Overall</th><th align="center" valign="top" rowspan="1" colspan="1">ILO-W</th><th align="center" valign="top" rowspan="1" colspan="1">ILO-N</th><th align="center" valign="top" rowspan="1" colspan="1">Metro</th></tr></thead><tbody><tr><td align="left" valign="top" rowspan="1" colspan="1">Households enrolled, n</td><td align="center" valign="top" rowspan="1" colspan="1">293</td><td align="center" valign="top" rowspan="1" colspan="1">105</td><td align="center" valign="top" rowspan="1" colspan="1">107</td><td align="center" valign="top" rowspan="1" colspan="1">81</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">&#x02003;Study A (2017&#x02013;2018)</td><td align="center" valign="top" rowspan="1" colspan="1">38</td><td align="center" valign="top" rowspan="1" colspan="1">18</td><td align="center" valign="top" rowspan="1" colspan="1">20</td><td align="center" valign="top" rowspan="1" colspan="1">0</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">&#x02003;Study B (2021&#x02013;2022)</td><td align="center" valign="top" rowspan="1" colspan="1">255</td><td align="center" valign="top" rowspan="1" colspan="1">87</td><td align="center" valign="top" rowspan="1" colspan="1">87</td><td align="center" valign="top" rowspan="1" colspan="1">81</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">Distance to nearest swine CAFO (kilometers)</td><td align="center" valign="top" rowspan="1" colspan="1"/><td align="center" valign="top" rowspan="1" colspan="1"/><td align="center" valign="top" rowspan="1" colspan="1"/><td align="center" valign="top" rowspan="1" colspan="1"/></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">&#x02003;Mean &#x000b1; SD</td><td align="center" valign="top" rowspan="1" colspan="1">7.88 &#x000b1; 9.97</td><td align="center" valign="top" rowspan="1" colspan="1">3.59 &#x000b1; 4.70<sup><xref rid="TFN2" ref-type="table-fn">a</xref>,<xref rid="TFN3" ref-type="table-fn">b</xref></sup></td><td align="center" valign="top" rowspan="1" colspan="1">2.92 &#x000b1; 2.42<sup><xref rid="TFN2" ref-type="table-fn">a</xref>,<xref rid="TFN3" ref-type="table-fn">b</xref></sup></td><td align="center" valign="top" rowspan="1" colspan="1">18.05 &#x000b1; 11.7</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">Mean &#x000b1; SD number of swine CAFOs within 5 km of<break/>household</td><td align="center" valign="top" rowspan="1" colspan="1">7.67 &#x000b1; 9.15</td><td align="center" valign="top" rowspan="1" colspan="1">9.60 &#x000b1; 7.43<sup><xref rid="TFN2" ref-type="table-fn">a</xref>,<xref rid="TFN4" ref-type="table-fn">c</xref></sup></td><td align="center" valign="top" rowspan="1" colspan="1">12.26 &#x000b1; 10.88<sup><xref rid="TFN3" ref-type="table-fn">b</xref>,<xref rid="TFN4" ref-type="table-fn">c</xref></sup></td><td align="center" valign="top" rowspan="1" colspan="1">0.22 &#x000b1; 0.61</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">Mean &#x000b1; SD number of swine CAFOs within 3 km of<break/>household</td><td align="center" valign="top" rowspan="1" colspan="1">2.34 &#x000b1; 3.89</td><td align="center" valign="top" rowspan="1" colspan="1">2.97 &#x000b1; 3.34<break/><sup><xref rid="TFN2" ref-type="table-fn">a</xref></sup></td><td align="center" valign="top" rowspan="1" colspan="1">3.69 &#x000b1; 5.18 <sup><xref rid="TFN3" ref-type="table-fn">b</xref></sup></td><td align="center" valign="top" rowspan="1" colspan="1">0.07 &#x000b1; 0.33</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">Mean &#x000b1; SD number of swine CAFOs within 1 km of<break/>household</td><td align="center" valign="top" rowspan="1" colspan="1">0.17 &#x000b1; 0.50</td><td align="center" valign="top" rowspan="1" colspan="1">0.23 &#x000b1; 0.57<break/><sup><xref rid="TFN2" ref-type="table-fn">a</xref></sup></td><td align="center" valign="top" rowspan="1" colspan="1">0.26 &#x000b1; 0.64 <sup><xref rid="TFN3" ref-type="table-fn">b</xref></sup></td><td align="center" valign="top" rowspan="1" colspan="1">0.00 &#x000b1; 0.00</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">Mean &#x000b1; SD swine production intensity (SPI) value</td><td align="center" valign="top" rowspan="1" colspan="1">5.85 &#x000b1; 0.74</td><td align="center" valign="top" rowspan="1" colspan="1">6.26 &#x000b1; 0.35<sup><xref rid="TFN2" ref-type="table-fn">a</xref>,<xref rid="TFN4" ref-type="table-fn">c</xref></sup></td><td align="center" valign="top" rowspan="1" colspan="1">6.31 &#x000b1; 0.35<sup><xref rid="TFN3" ref-type="table-fn">b</xref>,<xref rid="TFN4" ref-type="table-fn">c</xref></sup></td><td align="center" valign="top" rowspan="1" colspan="1">4.89 &#x000b1; 0.36</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">Households with &#x02265;1 Pig-2-Bac DNA positive surface<break/>swab, n (%)</td><td align="center" valign="top" rowspan="1" colspan="1">88/293<break/>(30)</td><td align="center" valign="top" rowspan="1" colspan="1">40/105<break/>(38)</td><td align="center" valign="top" rowspan="1" colspan="1">47/107 (44)</td><td align="center" valign="top" rowspan="1" colspan="1">1/81 (1)</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">Households with &#x02265;1 Pig-2-Bac DNA positive outdoor<break/>surface swab, n (%)</td><td align="center" valign="top" rowspan="1" colspan="1">75/293<break/>(26)</td><td align="center" valign="top" rowspan="1" colspan="1">34/105<break/>(32)</td><td align="center" valign="top" rowspan="1" colspan="1">40/107 (37)</td><td align="center" valign="top" rowspan="1" colspan="1">1/81 (1)</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">Households with &#x02265;1 Pig-2-Bac DNA positive indoor<break/>surface swab, n (%)</td><td align="center" valign="top" rowspan="1" colspan="1">55/293<break/>(19)</td><td align="center" valign="top" rowspan="1" colspan="1">27/105<break/>(26)</td><td align="center" valign="top" rowspan="1" colspan="1">28/107 (26)</td><td align="center" valign="top" rowspan="1" colspan="1">0/81 (0)</td></tr></tbody></table><table-wrap-foot><fn id="TFN1"><p id="P44"><italic toggle="yes">Note:</italic> ILO-W = industrial livestock operation worker household group. ILO-N = industrial livestock operation neighbor household group. Metro = metropolitan area household group. SD = standard deviation. CAFO = confined animal feeding operation. km = kilometer. All differences were tested using a Mann Whitney U test.</p></fn><fn id="TFN2"><label>a</label><p id="P45">= ILO-W and Metro group means are significantly (p &#x0003c; 0.05) different from each other.</p></fn><fn id="TFN3"><label>b</label><p id="P46">= ILO-N and Metro group means are significantly (p &#x0003c; 0.05) different from each other.</p></fn><fn id="TFN4"><label>c</label><p id="P47">= ILO-W and ILO-N group means are significantly (p &#x0003c; 0.05) different from each other.</p></fn></table-wrap-foot></table-wrap><table-wrap position="float" id="T2"><label>Table 2.</label><caption><p id="P48">Swab-level Pig-2-Bac DNA detection frequency and copy number per in<sup>2</sup> within household surface settled dust samples, overall and by household group, North Carolina, 2017 &#x02013; 2022.</p></caption><table frame="box" rules="all"><colgroup span="1"><col align="left" valign="middle" span="1"/><col align="left" valign="middle" span="1"/><col align="left" valign="middle" span="1"/><col align="left" valign="middle" span="1"/><col align="left" valign="middle" span="1"/></colgroup><thead><tr><th align="left" valign="top" rowspan="1" colspan="1"/><th align="center" valign="top" rowspan="1" colspan="1">N+/total (%)</th><th align="center" valign="top" rowspan="1" colspan="1">Odds of Pig-2-Bac DNA detection</th><th align="center" valign="top" rowspan="1" colspan="1">GM (SD) Log<sub>10</sub> Pig-</th><th align="center" valign="top" rowspan="1" colspan="1">Log<sub>10</sub> Pig-2-Bac DNA copy number per</th></tr><tr><th align="left" valign="top" rowspan="1" colspan="1"/><th align="center" valign="top" rowspan="1" colspan="1">Overall</th><th align="center" valign="top" rowspan="1" colspan="1">ILO-W</th><th align="center" valign="top" rowspan="1" colspan="1">ILO-N</th><th align="center" valign="top" rowspan="1" colspan="1">Metro</th></tr></thead><tbody><tr><td align="left" valign="top" rowspan="1" colspan="1">Surface swabs collected, n</td><td align="center" valign="top" rowspan="1" colspan="1">1,414</td><td align="center" valign="top" rowspan="1" colspan="1">536</td><td align="center" valign="top" rowspan="1" colspan="1">557</td><td align="center" valign="top" rowspan="1" colspan="1">321</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">Outdoor surface swabs, n</td><td align="center" valign="top" rowspan="1" colspan="1">695</td><td align="center" valign="top" rowspan="1" colspan="1">262</td><td align="center" valign="top" rowspan="1" colspan="1">273</td><td align="center" valign="top" rowspan="1" colspan="1">160</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">Indoor surface swabs, n</td><td align="center" valign="top" rowspan="1" colspan="1">719</td><td align="center" valign="top" rowspan="1" colspan="1">274</td><td align="center" valign="top" rowspan="1" colspan="1">284</td><td align="center" valign="top" rowspan="1" colspan="1">161</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">Pig-2-Bac DNA positive surface swabs</td><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/><td align="left" valign="top" rowspan="1" colspan="1"/></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">&#x02003;Overall; n + / total, (%)</td><td align="center" valign="top" rowspan="1" colspan="1">302/1,414 (21)</td><td align="center" valign="top" rowspan="1" colspan="1">159/536 (30)</td><td align="center" valign="top" rowspan="1" colspan="1">142/557 (25)</td><td align="center" valign="top" rowspan="1" colspan="1">1/321 (1)</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">&#x02003;Outdoor; n + / total, (%)</td><td align="center" valign="top" rowspan="1" colspan="1">179/695 (26)</td><td align="center" valign="top" rowspan="1" colspan="1">91/262 (35)</td><td align="center" valign="top" rowspan="1" colspan="1">87/273 (32)</td><td align="center" valign="top" rowspan="1" colspan="1">1/160 (0.1)</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">&#x02003;Indoor; n + / total, (%)</td><td align="center" valign="top" rowspan="1" colspan="1">123/719 (17)</td><td align="center" valign="top" rowspan="1" colspan="1">68/247 (28)</td><td align="center" valign="top" rowspan="1" colspan="1">55/284 (19)</td><td align="center" valign="top" rowspan="1" colspan="1">0/161 (0)</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">Pig-2-Bac DNA copy number per in<sup>2</sup></td><td align="center" valign="top" rowspan="1" colspan="1"/><td align="center" valign="top" rowspan="1" colspan="1"/><td align="center" valign="top" rowspan="1" colspan="1"/><td align="center" valign="top" rowspan="1" colspan="1"/></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">&#x02003;Overall</td><td align="center" valign="top" rowspan="1" colspan="1"/><td align="center" valign="top" rowspan="1" colspan="1"/><td align="center" valign="top" rowspan="1" colspan="1"/><td align="center" valign="top" rowspan="1" colspan="1"/></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">&#x02003;&#x02003;Mean &#x000b1; SD</td><td align="center" valign="top" rowspan="1" colspan="1">38.85 &#x000b1; 551.27</td><td align="center" valign="top" rowspan="1" colspan="1">35.75 &#x000b1; 131.17<sup><xref rid="TFN6" ref-type="table-fn">a</xref>,<xref rid="TFN8" ref-type="table-fn">c</xref></sup></td><td align="center" valign="top" rowspan="1" colspan="1">63.85 &#x000b1; 868.48<sup><xref rid="TFN8" ref-type="table-fn">c</xref></sup></td><td align="center" valign="top" rowspan="1" colspan="1">0.63 &#x000b1; 7.06</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">&#x02003;&#x02003;Geometric mean (SD)</td><td align="center" valign="top" rowspan="1" colspan="1">0.57 (11.86)</td><td align="center" valign="top" rowspan="1" colspan="1">0.87 (15.63)</td><td align="center" valign="top" rowspan="1" colspan="1">0.65 (15.40)</td><td align="center" valign="top" rowspan="1" colspan="1">0.23 (1.63)</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">&#x02003;Outdoor</td><td align="center" valign="top" rowspan="1" colspan="1"/><td align="center" valign="top" rowspan="1" colspan="1"/><td align="center" valign="top" rowspan="1" colspan="1"/><td align="center" valign="top" rowspan="1" colspan="1"/></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">&#x02003;&#x02003;Mean &#x000b1; SD</td><td align="center" valign="top" rowspan="1" colspan="1">60.04 &#x000b1; 781.88</td><td align="center" valign="top" rowspan="1" colspan="1">48.39 &#x000b1; 165.42</td><td align="center" valign="top" rowspan="1" colspan="1">105.8 &#x000b1; 1236.62</td><td align="center" valign="top" rowspan="1" colspan="1">1.06 &#x000b1; 10.01</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">&#x02003;&#x02003;Geometric mean (SD)</td><td align="center" valign="top" rowspan="1" colspan="1">0.82 (13.17)</td><td align="center" valign="top" rowspan="1" colspan="1">1.28 (17.16)</td><td align="center" valign="top" rowspan="1" colspan="1">1.01 (17.36)</td><td align="center" valign="top" rowspan="1" colspan="1">0.27 (1.62)</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">&#x02003;Indoor</td><td align="center" valign="top" rowspan="1" colspan="1"/><td align="center" valign="top" rowspan="1" colspan="1"/><td align="center" valign="top" rowspan="1" colspan="1"/><td align="center" valign="top" rowspan="1" colspan="1"/></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">&#x02003;&#x02003;Mean &#x000b1; SD</td><td align="center" valign="top" rowspan="1" colspan="1">18.37 &#x000b1; 79.36</td><td align="center" valign="top" rowspan="1" colspan="1">23.67 &#x000b1; 85.18</td><td align="center" valign="top" rowspan="1" colspan="1">23.54 &#x000b1; 93.47</td><td align="center" valign="top" rowspan="1" colspan="1">0.21 &#x000b1; 0.07</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">&#x02003;&#x02003;Geometric mean (SD)</td><td align="center" valign="top" rowspan="1" colspan="1">0.41 (10.17)</td><td align="center" valign="top" rowspan="1" colspan="1">0.60 (13.58)</td><td align="center" valign="top" rowspan="1" colspan="1">0.43 (12.84)</td><td align="center" valign="top" rowspan="1" colspan="1">0.19 (1.54)</td></tr></tbody></table><table-wrap-foot><fn id="TFN5"><p id="P49">Note. in = inches. SD = standard deviation. ILO-W = industrial livestock operation workers. ILO-N = industrial livestock operation neighbors. Metro = metropolitan area residents. All values below the limit of detection were assigned a value of 0.27 Pig-2-Bac DNA copies per in<sup>2</sup>. All differences were tested using a Mann Whitney U test.</p></fn><fn id="TFN6"><label>a</label><p id="P50">= ILO-W and Metro group means are significantly (p &#x0003c; 0.05) different from each other.</p></fn><fn id="TFN7"><label>b</label><p id="P51">= ILO-N and Metro group means are significantly (p &#x0003c; 0.05) different from each other.</p></fn><fn id="TFN8"><label>c</label><p id="P52">= ILO-W and ILO-N group means are significantly (p &#x0003c; 0.05) different from each other.</p></fn></table-wrap-foot></table-wrap><table-wrap position="float" id="T3"><label>Table 3.</label><caption><p id="P53">Associations between household surface sampling location (outdoor versus indoor) and Pig-2-Bac DNA detection and log<sub>10</sub> copy number per in<sup>2</sup>, North Carolina, 2017 &#x02013; 2022.</p></caption><table frame="box" rules="all"><colgroup span="1"><col align="left" valign="middle" span="1"/><col align="left" valign="middle" span="1"/><col align="left" valign="middle" span="1"/><col align="left" valign="middle" span="1"/><col align="left" valign="middle" span="1"/><col align="left" valign="middle" span="1"/><col align="left" valign="middle" span="1"/></colgroup><thead><tr><th align="left" valign="top" rowspan="1" colspan="1"/><th align="center" valign="top" rowspan="1" colspan="1"/><th colspan="2" align="center" valign="top" rowspan="1"/><th align="center" valign="top" rowspan="1" colspan="1">2-Bac DNA copy number per in<sup>2</sup></th><th colspan="2" align="center" valign="top" rowspan="1">in<sup>2</sup></th></tr><tr><th align="left" valign="top" rowspan="1" colspan="1"/><th align="center" valign="top" rowspan="1" colspan="1"/><th align="center" valign="top" rowspan="1" colspan="1">Indoor</th><th align="center" valign="top" rowspan="1" colspan="1">Outdoor</th><th align="center" valign="top" rowspan="1" colspan="1"/><th align="center" valign="top" rowspan="1" colspan="1">Indoor</th><th align="center" valign="top" rowspan="1" colspan="1">Outdoor</th></tr><tr><th align="left" valign="top" rowspan="1" colspan="1"/><th align="center" valign="top" rowspan="1" colspan="1"/><th align="center" valign="top" rowspan="1" colspan="1">OR (95%<break/>CI)</th><th align="center" valign="top" rowspan="1" colspan="1">OR (95%<break/>CI)</th><th align="center" valign="top" rowspan="1" colspan="1"/><th align="center" valign="top" rowspan="1" colspan="1">&#x003b2; (95%<break/>CI)</th><th align="center" valign="top" rowspan="1" colspan="1">&#x003b2; (95% CI)</th></tr></thead><tbody><tr><td align="left" valign="top" rowspan="1" colspan="1">Overall</td><td align="center" valign="top" rowspan="1" colspan="1">302/1414 (21)</td><td align="center" valign="top" rowspan="1" colspan="1">ref</td><td align="center" valign="top" rowspan="1" colspan="1">2.2<break/>(1.6, 3.0)</td><td align="center" valign="top" rowspan="1" colspan="1">0.82<break/>(13.17)</td><td align="center" valign="top" rowspan="1" colspan="1">ref</td><td align="center" valign="top" rowspan="1" colspan="1">0.30<break/>(0.19,<break/>0.41)</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">Industrial livestock operation workers (ILO-W)</td><td align="center" valign="top" rowspan="1" colspan="1">159/536 (30)</td><td align="center" valign="top" rowspan="1" colspan="1">ref</td><td align="center" valign="top" rowspan="1" colspan="1">2.1<break/>(1.3, 3.3)</td><td align="center" valign="top" rowspan="1" colspan="1">1.28<break/>(17.16)</td><td align="center" valign="top" rowspan="1" colspan="1">ref</td><td align="center" valign="top" rowspan="1" colspan="1">0.33<break/>(0.14,<break/>0.51)</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">Industrial livestock operation neighbors (ILO-N)</td><td align="center" valign="top" rowspan="1" colspan="1">142/557 (25)</td><td align="center" valign="top" rowspan="1" colspan="1">ref</td><td align="center" valign="top" rowspan="1" colspan="1">2.4<break/>(1.5, 3.8)</td><td align="center" valign="top" rowspan="1" colspan="1">1.01<break/>(17.36)</td><td align="center" valign="top" rowspan="1" colspan="1">ref</td><td align="center" valign="top" rowspan="1" colspan="1">0.36<break/>(0.16,<break/>0.57)</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">Metro residents</td><td align="center" valign="top" rowspan="1" colspan="1">1/321 (1)</td><td align="center" valign="top" rowspan="1" colspan="1">--</td><td align="center" valign="top" rowspan="1" colspan="1">--</td><td align="center" valign="top" rowspan="1" colspan="1">0.27<break/>(1.62)</td><td align="center" valign="top" rowspan="1" colspan="1">--</td><td align="center" valign="top" rowspan="1" colspan="1">--</td></tr></tbody></table><table-wrap-foot><fn id="TFN9"><p id="P54">Note. OR = odds ratio. GM = geometric mean. SD = standard deviation. in = inches. ref = reference. Overall category includes the contribution of the Metro group. Models are adjusted for Study A (2017&#x02013;2018) vs Study B (2021&#x02013;2022). All values below the limit of detection were assigned a value of 0.27 Pig-2-Bac DNA copies per in<sup>2</sup>.</p></fn></table-wrap-foot></table-wrap><table-wrap position="float" id="T4"><label>Table 4.</label><caption><p id="P55">Associations between distance to nearest swine CAFO and swine production intensity (SPI) and Pig-2-</p></caption><table frame="box" rules="all"><colgroup span="1"><col align="left" valign="middle" span="1"/><col align="left" valign="middle" span="1"/><col align="left" valign="middle" span="1"/><col align="left" valign="middle" span="1"/></colgroup><thead><tr><th align="left" valign="top" rowspan="1" colspan="1"/><th align="center" valign="top" rowspan="1" colspan="1">Pig-2-Bac DNA<break/>Detection N+/total (%)</th><th align="center" valign="middle" rowspan="1" colspan="1">Distance to nearest swine CAFO in km</th><th align="center" valign="middle" rowspan="1" colspan="1">Swine Production Intensity (SPI)</th></tr><tr><th align="left" valign="top" rowspan="1" colspan="1"/><th align="center" valign="top" rowspan="1" colspan="1"/><th align="center" valign="top" rowspan="1" colspan="1">OR (95% CI)</th><th align="center" valign="top" rowspan="1" colspan="1">OR (95% CI)</th></tr></thead><tbody><tr><td align="left" valign="top" rowspan="1" colspan="1">Overall</td><td align="center" valign="top" rowspan="1" colspan="1">280/12<break/>38 (23)</td><td align="center" valign="top" rowspan="1" colspan="1">0.8 (0.7, 0.9)</td><td align="center" valign="top" rowspan="1" colspan="1">5.4 (2.8, 10.4)</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">Industrial livestock operation workers<break/>(ILO-W)</td><td align="center" valign="top" rowspan="1" colspan="1">147/41<break/>5 (35)</td><td align="center" valign="top" rowspan="1" colspan="1">0.8 (0.6, 1.1)</td><td align="center" valign="top" rowspan="1" colspan="1">13.1 (2.8, 60.2)</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">Industrial livestock operation neighbors<break/>(ILO-N)</td><td align="center" valign="top" rowspan="1" colspan="1">132/51<break/>0 (26)</td><td align="center" valign="top" rowspan="1" colspan="1">0.9 (0.7, 1.1)</td><td align="center" valign="top" rowspan="1" colspan="1">2.2 (0.7, 7.2)</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">Metro residents</td><td align="center" valign="top" rowspan="1" colspan="1">1/313<break/>(1)</td><td align="center" valign="top" rowspan="1" colspan="1">--</td><td align="center" valign="top" rowspan="1" colspan="1">--</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1"/><td align="center" valign="top" rowspan="1" colspan="1">GM<break/>(SD)<break/>log<sub>10</sub> Pig-2-Bac</td><td align="center" valign="middle" rowspan="1" colspan="1">Distance to nearest swine CAFO in km</td><td align="center" valign="middle" rowspan="1" colspan="1">Swine Production Intensity (SPI)</td></tr></tbody></table><table-wrap-foot><fn id="TFN10"><p id="P56">Bac DNA detection on any surfaces, North Carolina, 2017 &#x02013; 2022.</p></fn><fn id="TFN11"><p id="P57">Note: km = kilometer. CAFO = concentrated animal feeding operation. Overall category includes the contribution of the Metro group. Models are adjusted for Study A (2017&#x02013;2018) vs Study B (2021&#x02013;2022).</p></fn></table-wrap-foot></table-wrap><table-wrap position="float" id="T5"><label>Table 5.</label><caption><p id="P58">Associations between distance to nearest swine CAFO and swine production intensity (SPI) and change in log<sub>10</sub> Pig-2-Bac DNA copy number per in<sup>2</sup> on any surfaces, North Carolina, 2017 &#x02013; 2022.</p></caption><table frame="box" rules="all"><colgroup span="1"><col align="left" valign="middle" span="1"/><col align="left" valign="middle" span="1"/><col align="left" valign="middle" span="1"/><col align="left" valign="middle" span="1"/></colgroup><thead><tr><th align="left" valign="top" rowspan="1" colspan="1"/><th align="center" valign="top" rowspan="1" colspan="1">DNA<break/>copy number per in<sup>2</sup></th><th align="center" valign="top" rowspan="1" colspan="1"/><th align="center" valign="top" rowspan="1" colspan="1"/></tr><tr><th align="left" valign="top" rowspan="1" colspan="1"/><th align="center" valign="top" rowspan="1" colspan="1"/><th align="center" valign="top" rowspan="1" colspan="1">&#x003b2; (95% CI)</th><th align="center" valign="top" rowspan="1" colspan="1">&#x003b2; (95% CI)</th></tr></thead><tbody><tr><td align="left" valign="top" rowspan="1" colspan="1">Overall</td><td align="center" valign="top" rowspan="1" colspan="1">0.57<break/>(11.86)</td><td align="center" valign="top" rowspan="1" colspan="1">&#x02212;0.01 (&#x02212;0.01, &#x02212;0.006)</td><td align="center" valign="top" rowspan="1" colspan="1">0.21 (0.13, 0.29)</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">Industrial livestock operation workers (ILO-W)</td><td align="center" valign="top" rowspan="1" colspan="1">0.87<break/>(15.63)</td><td align="center" valign="top" rowspan="1" colspan="1">&#x02212;0.02 (&#x02212;0.04, &#x02212;0.005)</td><td align="center" valign="top" rowspan="1" colspan="1">0.68 (0.21, 1.14)</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">Industrial livestock operation neighbors (ILO-N)</td><td align="center" valign="top" rowspan="1" colspan="1">0.65<break/>(15.40)</td><td align="center" valign="top" rowspan="1" colspan="1">&#x02212;0.01 (&#x02212;0.06, 0.03)</td><td align="center" valign="top" rowspan="1" colspan="1">0.16 (&#x02212;0.23, 0.55)</td></tr><tr><td align="left" valign="top" rowspan="1" colspan="1">Metro residents</td><td align="center" valign="top" rowspan="1" colspan="1">0.23<break/>(1.63)</td><td align="center" valign="top" rowspan="1" colspan="1">--</td><td align="center" valign="top" rowspan="1" colspan="1">--</td></tr></tbody></table><table-wrap-foot><fn id="TFN12"><p id="P59">Note: SD = standard deviation. GM = geometric mean. in = inches. km = kilometers. CAFO = concentrated animal feeding operation. Overall category includes the contribution of the Metro group. Models are adjusted for Study A (2017&#x02013;2018) vs Study B (2021&#x02013;2022). All values below the limit of detection were assigned a value of 0.27 Pig-2-Bac DNA copies per in<sup>2</sup>.</p></fn></table-wrap-foot></table-wrap><boxed-text id="BX1" position="float"><caption><title>Highlights</title></caption><list list-type="bullet" id="L1"><list-item><p id="P60">Swine industrial livestock operations (ILOs) in NC produce large amounts of fecal waste and are regulated as non-discharge facilities.</p></list-item><list-item><p id="P61">Pig-2-Bac was measured on household surfaces of residents living at varying proximity from ILOs.</p></list-item><list-item><p id="P62">More Pig-2-Bac was detected on household surfaces in areas of higher swine production intensity.</p></list-item><list-item><p id="P63">More Pig-2-Bac was detected outdoors compared to indoors, indicating environmental source.</p></list-item><list-item><p id="P64">Pig-2-Bac has utility to quantify off-site spread of swine fecal matter to households proximal to ILOs.</p></list-item></list></boxed-text></floats-group></article>