TOC Summary: This system effectively identified high-risk human population areas.
The Dynamic Continuous-Area Space-Time (DYCAST) system is a biologically based spatiotemporal model that uses public reports of dead birds to identify areas at high risk for West Nile virus (WNV) transmission to humans. In 2005, during a statewide epidemic of WNV (880 cases), the California Department of Public Health prospectively implemented DYCAST over 32,517 km2 in California. Daily risk maps were made available online and used by local agencies to target public education campaigns, surveillance, and mosquito control. DYCAST had 80.8% sensitivity and 90.6% specificity for predicting human cases, and κ analysis indicated moderate strength of chance-adjusted agreement for >4 weeks. High-risk grid cells (populations) were identified an average of 37.2 days before onset of human illness; relative risk for disease was >39× higher than for low-risk cells. Although prediction rates declined in subsequent years, results indicate DYCAST was a timely and effective early warning system during the severe 2005 epidemic.
West Nile virus (WNV; family
Previous efforts for the early detection and monitoring of WNV activity have used dead bird density or spatial scan statistic as a proxy for transmission risk for humans (
Another approach is the DYCAST system (
Methods
Public reports of dead birds were obtained from the DBSP. Through press releases and various types of media campaigns at state and local levels, citizens were encouraged to use the hotline (1-877-WNV-BIRD) and website (
The DYCAST procedure was implemented by using GIS software, Smallworld 3.2.1, and Magik programming language (General Electric Company, Fairfield, CT, USA). Regions comprising 32,517 km2 among 16 participating agencies in 17 counties were superimposed by grids consisting of ≈0.44 km2 (≈0.17 mi2) cells (
California counties with 2005 Dynamic Continuous-Area Space-Time (DYCAST) analysis regions (32,517 km2), shown in black. Data were mapped by using ArcMap version 9.3.1 (Environmental Systems Research Institute, Inc., Redlands, CA, USA) and North American Datum of 1983, High Accuracy Reference Network (NAD83 HARN) California II State Plane coordinate system (Lambert Conformal Conic Projection).
Schematic of the Dynamic Continuous-Area Space-Time (DYCAST) procedure, illustrating domains of Knox test (
The DYCAST procedure was run at the center of every cell for which a minimum of 15 birds (the analysis threshold) was reported within the spatiotemporal domain, to minimize statistical instability that otherwise occurs at lower numbers of birds (
Model evaluation was conducted by analyzing the relationship between the location of human cases and the ability of DYCAST to predict their occurrence in both space and time. Prediction was defined as the identification of a cell as high risk before or on the date of illness onset (
An initial pilot phase and subsequent prospective implementation occurred through a cooperative agreement with the Center for Advanced Research of Spatial Information at Hunter College, City University of New York. The Center for Vectorborne Diseases (CVEC) at the University of California Davis provided server infrastructure (Microsoft SQL Server, Microsoft Corporation; ArcIMS, Environmental Systems Research Institute, Inc.) for data exchange and implementation of interactive online risk maps, in collaboration with CDPH and the Mosquito and Vector Control Association of California. The Center for Advanced Research of Spatial Information calibrated and ran the DYCAST procedure and exported the data to the CVEC map server. During the pilot phase, animations of daily risk from June 1 through June 23, 2005, were retrospectively generated for 3 study areas that were selected based on high numbers of dead bird reports: the south Sacramento Valley region (Sacramento, Placer, and Yolo Counties), the central San Joaquin Valley region (Fresno, Kings, and Tulare Counties), and the greater Los Angeles area.
Prospective modeling began on June 17, and on July 1 the system was fully implemented and integrated into the CDPH WNV Surveillance Program. This implementation involved running the DYCAST procedure for analysis regions every weekday through November 1, 2005; daily risk maps (
Dynamic Continuous-Area Space-Time (DYCAST) risk maps (top) and timeline (bottom) of West Nile virus epidemic in Sacramento County, California, 2005. Within timeline, black bars represent reported human cases within Sacramento County by date of onset of illness (n = 152; 11/163 cases were missing spatial and/or temporal data), and red region represents total area in Sacramento County designated by DYCAST as high risk by date of analysis. Maps illustrate areas of high-risk (red) cells during the last day of pilot-phase analysis (Jun 23), which detected the 2 emerging clusters seen above in the Arden-Arcade and Citrus Heights regions, as well as during rapid expansion of high-risk areas (Jul 12) and the peak of the epidemic (Aug 1). Map at far right displays cells color coded by number of days designated by DYCAST as high risk during 2005, from green (low) to red (high) (range 1–94 days, mean 47.7 days, median 51 days, SD 19.9 days). Human cases with onset of illness before or including respective date of analysis are shown as black circles; gray area represents DYCAST analysis regions. Inset at top left illustrates location (black square) in California corresponding to the risk maps. Data were mapped by using ArcMap version 9.3.1 (Environmental Systems Research Institute, Inc., Redlands, CA, USA) and North American Datum of 1983, High Accuracy Reference Network (NAD83 HARN) California II State Plane coordinate system (Lambert Conformal Conic Projection).
Beginning in 2006, DYCAST was implemented for the entire state of California and adopted as a formal component of the California Mosquito-Borne Virus Surveillance and Response Plan (
In December of 2006 and 2007, links to web-based surveys regarding the DBSP were provided by email to 64 local mosquito control agencies in 47 counties, in part to assess which agencies used DYCAST to assist mosquito larviciding or adulticiding activities each year. For agencies that participated in the 2005 DYCAST program, the 2006 survey also asked if DYCAST results were used “to assist public education or to promote dead bird reporting” in 2005 (control activities were not surveyed for this year). Rate ratios (RRs) were used to compare annual DYCAST prediction rates of reported human WNV cases between agencies that did and did not use DYCAST to assist each mosquito control activity (
Results
During 2005, a total of 124,876 calls were placed to the DBSP hotline, >3 million hits were made to the website, and 109,358 dead birds were reported in California (
| Surveillance | 2003 | 2004 | 2005 | 2006 | 2007 | 2008 | 2009 |
|---|---|---|---|---|---|---|---|
| Dead birds | |||||||
| Reported | 8,650 | 93,053 | 109,358 | 46,365 | 27,611 | 33,594 | 15,472 |
| Tested | 1,765 | 5,723 | 9,227 | 6,535 | 6,000 | 6,124 | 2,805 |
| Positive | 96 | 3,232 | 3,046 | 1,446 | 1,396 | 2,568 | 515 |
| Humans | |||||||
| Cases | 3 | 779 | 880 | 278 | 380 | 445 | 112 |
| Fatalities | 0 | 29 | 19 | 7 | 21 | 15 | 4 |
*Includes entire state of California. Data sources: California Department of Public Health, Vector-Borne Disease Section (
| High risk | Contained case | Total | |
|---|---|---|---|
| Yes | No | ||
| Yes | 269 | 6,891 | 7,160 |
| No | 64 | 66,543 | 66,607 |
| Total | 333† | 73,434 | 73,767 |
*True positive (yes/yes) designates cell identified by Dynamic Continuous-Area Space-Time (DYCAST) model as high risk before or on the date of onset of illness of earliest case located within cell. If cell was identified as high risk after date of onset of illness, or cell was never identified as high risk and a case occurred within it, it was designated false negative (yes/no). †Number of cells that contained cases is less than the number of cases (354) because of 14 cells that contained 2 predicted cases, 3 cells that contained 3 predicted cases, and 1 cell that contained 2 missed cases.
Percentages of reported human West Nile virus cases within Sacramento County (red line) and remainder of analysis regions (black line) predicted by Dynamic Continuous-Area Space-Time (DYCAST) in 2005, as well as κ values (gray bars; calculated every other day with 1-day temporal window
| County | No./total cases (%) |
| 2005† | 2006 | 2007 | 2008 | 2009 | |
|---|---|---|---|---|---|
| Alameda | NR | 0/1 (0) | NR | 0/1 (0) | NR |
| Amador | 0/1 (0) | NR | NR | NR | NR |
| Butte | 0/1 (0) | 4/29 (13.8) | 2/14 (14.3) | 0/4 (0) | 0/2 (0) |
| Calaveras | – | NR | NR | 0/1 (0) | NR |
| Colusa | – | 0/3 (0) | 0/2 (0) | 0/1 (0) | NR |
| Contra Costa | – | 4/8 (50.0) | 3/3 (100.0) | 3/3 (100.0) | 0/5 (0) |
| El Dorado | – | 0/2 (0) | NR | 0/1 (0) | 0/1 (0) |
| Fresno | – | 6/9 (66.7) | 9/17 (52.9) | 0/2 (0) | 2/11(18.2) |
| Glenn | – | 2/10 (20.0) | 0/1 (0) | 0/1 (0) | NR |
| Imperial | NR | 0/1 (0) | 0/2 (0) | NR | NR |
| Kern | – | 2/45 (4.4) | 74/126 (58.7) | 2/2 (100.0) | 0/15 (0) |
| Kings | – | 0/1 (0) | 0/6 (0) | 0/1 (0) | 0/3 (0) |
| Lake | NR | 0/1 (0) | NR | NR | NR |
| Los Angeles | – | 0/12 (0) | 2/31 (6.5) | 18/147 (12.2) | 1/16 (7.1) |
| Madera | – | NR | 0/2 (0) | NR | NR |
| Marin | NR | 0/1 (0) | NR | NR | NR |
| Mendocino | NR | NR | 0/2 (0) | NR | NR |
| Merced | 15/24 (62.5) | 0/4 (0) | 0/3 (0) | 0/1 (0) | 0/4 (0) |
| Mono | NR | 0/1 (0) | NR | NR | NR |
| Monterey | NR | NR | NR | NR | 0/1 (0) |
| Napa | NR | 0/1 (0) | 0/1 (0) | NR | NR |
| Nevada | – | 0/1 (0) | NR | NR | NR |
| Orange | – | 0/5 (0) | 0/9 (0) | 18/60 (30) | 0/2 (0) |
| Placer | 29/32 (90.6) | 3/8 (37.5) | 1/4 (25.0) | 1/5 (20.0) | NR |
| Riverside | 0/10 (0) | 0/4 (0) | 0/16 (0) | 0/55 (0) | 0/2 (0) |
| Sacramento | 142/152 (93.4) | 9/15 (60.0) | 7/22 (31.8) | 4/12 (33.3) | NR |
| San Bernardino | 0/6 (0) | 0/3 (0) | 0/3 (0) | 5/29 (17.2) | 0/2 (0) |
| San Diego | – | NR | 0/12 (0) | 1/30 (3.3) | 0/4 (0) |
| San Joaquin | 25/34 (73.5) | 4/8 (50.0) | 3/8 (37.5) | 3/9 (33.3) | 0/8 (0) |
| San Luis Obispo | NR | 0/1 (0) | NR | NR | NR |
| San Mateo | 0/1 (0) | NR | NR | NR | NR |
| Santa Clara | – | 3/5 (60.0) | 1/3 (33.3) | 0/1 (0) | NR |
| Shasta | – | 2/4 (50.0) | 1/9 (11.1) | 0/1 (0) | NR |
| Solano | 4/5 (80.0) | 6/8 (75.0) | NR | 1/1 (100.0) | NR |
| Sonoma | 0/1 (0) | NR | 0/1 (0) | NR | NR |
| Stanislaus | 67/79 (84.8) | 3/10 (30.0) | 7/20 (35.0) | 6/16 (37.5) | 0/12 (0) |
| Sutter | – | 0/12 (0) | 0/2 (0) | NR | NR |
| Tehama | – | 0/6 (0) | 0/3 (0) | 0/4 (0) | NR |
| Tulare | – | 0/5 (0) | 0/9 (0) | 2/3 (66.7) | 0/3 (0) |
| Tuolumne | – | NR | NR | NR | NR |
| Ventura | NR | 1/2 (50.0) | 0/1 (0) | NR | NR |
| Yolo | 7/8 (87.5) | 18/26 (69.2) | 0/1 (0) | 0/1 (0) | 0/2 (0) |
| Yuba | – | 0 (0/3) | NR | NR | NR |
| Total | 289/354 (81.6) | 67/255 (26.3) | 110/333 (33.0) | 64/392 (16.3) | 3/93 (3.2) |
*DYCAST, Dynamic Continuous-Area Space-Time; NR, no reported human West Nile virus cases; –, nonparticipating counties with reported cases in 2005. Records without a geocodable address or onset of illness cannot be included in the DYCAST model and are therefore not included in these totals. Counties with no reported cases from 2005–2009 are not shown.
†Analysis regions (
According to the 2006 survey, 10/14 (71.4%) of responding local mosquito control agencies within the analysis regions used DYCAST results to assist public education or to promote dead bird reporting in 2005. DYCAST risk maps were also used to direct WNV surveillance (and ultimately control) efforts as early as the pilot phase, when 2 emerging clusters of high-risk cells were identified around the Arden-Arcade and Citrus Heights regions of Sacramento County on June 24, 2005 (
After 2005, the number of reported dead birds generally decreased (
| Year and activity | % (No.) agencies | Prediction rate | Prediction rate (excluding outlier)† | |||||
|---|---|---|---|---|---|---|---|---|
| % Cases (no./total) | Rate ratio (95% CI) | p value | % Cases (no./total) | Rate ratio (95% CI) | p value | |||
| 2006 | ||||||||
| Larviciding | 10.06 (2.45–41.32) | NA | NA | |||||
| Yes | 85.0 (34) | 41.9 (52/124) | 41.9 (52/124) | |||||
| No | 15.0 (6) | 4.2 (2/48) | 0 (0/5) | |||||
| Adulticiding | 10.91 (2.65–44.88) | NA | NA | |||||
| Yes | 74.4 (29) | 39.7 (48/121) | 39.7 (48/121) | |||||
| No | 25.6 (10) | 3.6 (2/55) | 0 (0/12) | |||||
| 2007 | ||||||||
| Larviciding | 10.16 (1.41–73.00) | 5.63 (0.66–48.15) | 0.115 | |||||
| Yes | 72.2 (13) | 56.4 (79/140) | 31.3 (5/16) | |||||
| No | 27.8 (5) | 5.6 (1/18) | 5.6 (1/18) | |||||
| Adulticiding | 0.37 (0.15–0.91) | 1.88 (0.22–16.05) | 0.566 | |||||
| Yes | 47.1 (8) | 20.8 (5/24) | 20.8 (5/24) | |||||
| No | 52.9 (9) | 56.4 (75/133) | 11.1 (1/9) | |||||
*DYCAST, Dynamic Continuous-Area Space-Time; CI, confidence interval; NA, not applicable. Agencies were asked whether they used DYCAST to assist larviciding, adulticiding; agencies that did not respond to survey, as well as answers of “Don’t know” (2006: larviciding: n = 2, adulticiding: n = 4) and missing data (2006: larviciding: n = 5, adulticiding: n = 4; 2007: adulticiding: n = 1), were omitted from analysis. Number of analyzed agencies with reported human cases: 2006: larviciding: “Yes”: n = 21, “No”: n = 4; adulticiding: “Yes”: n = 19, “No”: n = 7; 2007: larviciding: “Yes”: n = 6, “No”: n = 4; adulticiding: “Yes”: n = 5, “No”: n = 4. p values are 2 tailed; statistically significant associations (p<0.05) are in
Discussion
Results from prospective implementation of the DYCAST system in California indicate that the risk model provided accurate and early identification of areas at high risk for WNV transmission to humans during a statewide epidemic in 2005, and was used by local agencies to assist public education campaigns, surveillance, and mosquito control programs. Our findings indicate that DYCAST yielded high levels of sensitivity and specificity for predicting human cases during the 2005 epidemic and that relative risk for a WNV case was >39× higher in high-risk cells than in low-risk cells (this value should be considered somewhat inflated, however, because not all low-risk cells contained populated areas). Given the low prevalence of cells containing cases (0.45%), the dynamic nature of DYCAST, and the (>1 cell) spatial scale of WNV transmission and mosquito control (
Cells containing predicted cases were identified as high risk before onset of illness by a mean of 37.2 days; given the 2–14 day range of the human WNV incubation period (
Analysis of West Nile virus cases, California, USA, 2005. Gray region represents area within all analysis regions (black line) and Sacramento County (gray line, for scale) designated by Dynamic Continuous-Area Space-Time as high risk by date of analysis. Red line represents cumulative percentage of reported human West Nile virus cases by date of onset of illness. Time between expansion of high-risk areas and subsequent increase in number of cases may provide an opportunity to respond before epidemic transmission occurs.
Results from Sacramento County in 2005 demonstrate the practical application of DYCAST for conserving and directing public health resources, such as targeting surveillance efforts that detected the county’s first positive mosquito pools that year. During subsequent months, Sacramento County was the location of the largest WNV epidemic in the United States, with 163 reported human cases (
Notably, prediction rates during 2006–2009 were substantially lower than in 2005, which has implications for the robustness of the model in nonepidemic years or regions. The fairly prevalent use of DYCAST results to assist mosquito control activities in 2006 and 2007 may have played a role in reducing the model’s prediction rates in circumstances in which WNV transmission was successfully interrupted before human infection occurred (
Efficacy and sustainability of the DYCAST system may be compromised by declines in dead bird reporting, which could be caused by public fatigue or apathy, reductions in reporting infrastructure, or declines in bird deaths caused by herd immunity (
Regardless, DYCAST proved to be a timely and effective early warning system during a severe WNV epidemic. The use of such prospective measures enable the conservation and focus of valuable human and financial resources, which in some cases could be the difference in making an otherwise chaotic epidemic situation tractable. More responsive and efficient surveillance and control can prevent additional human disease, decrease reliance on more substantial control activities later in the season, and reduce indirect costs from medical expenses and productivity loss. The total cost of the 2005 WNV epidemic in Sacramento County alone has been estimated at ≈$3 million (
This study also highlights the benefits of interdisciplinary and interagency collaboration; synergies between 2 academic institutions and a governmental public health agency shortened the time from research to implementation, and engagement with local mosquito control agencies enabled the practical application of results in real time. Furthermore, our findings demonstrate the potential of harnessing the public’s ability to provide timely and useful surveillance data through telephone and internet communications. The leveraging of similar sociotechnologic infrastructure, from mobile phones to internet search queries and social networks, may play a major role in the success, scalability, and cost-effectiveness of predicting and preventing emerging diseases in the future.
We thank the CDPH DBSP and hotline staff, especially Stan Husted, Lauren Marcus, Colleen Barclay, and Erin Castle; Dave Brown; Ken Linthicum; and Craig Wolff. We also thank Anne Kjemtrup, Stan Husted, and Constandinos Theophilides for reviewing this manuscript, Ted Holford for statistics advice, and the Mosquito and Vector Control Association of California and the following agencies that participated in the 2005 DYCAST program: Alameda County Mosquito Abatement District, Amador County Health Department, City of Moorpark, East Side Mosquito Abatement District, El Dorado County Vector Control, Marin-Sonoma Mosquito and Vector Control District, Merced County Mosquito Abatement District, Northwest Mosquito and Vector Control District, Oroville Mosquito Abatement District, Placer County Mosquito Abatement District, Sacramento-Yolo Mosquito and Vector Control District, San Joaquin Mosquito Abatement District, San Mateo County Mosquito Abatement District, Solano County Mosquito Abatement District, Turlock Mosquito Abatement District, and the West Valley Mosquito and Vector Control District.
This study was funded by the US Centers for Disease Control and Prevention, Epidemiology and Laboratory Capacity for Infectious Diseases (grant U50/CCU923677).
Current affiliation: Brown University, Providence, Rhode Island, USA.
Current affiliation: University of British Columbia, Vancouver, British Columbia, Canada.
Mr Carney was coordinator of the West Nile Virus Dead Bird Surveillance Program at the California Department of Public Health from 2004 through 2007. He is currently pursuing a PhD in ecology and evolutionary biology at Brown University. His research interests include paleontology and the evolution of flight in dinosaurs, geographic information systems, and the surveillance and epidemiology of vector-borne diseases.