The PROBIT methodology was presented in the 1995 World Health Organization Technical Report on Anthropometry as an alternative to the standard prevalence based method of measuring malnutrition in children. Theoretically the PROBIT method will always give a smaller standard error than the standard prevalence method in measuring malnutrition. A recent article by Dale et al. assessed the PROBIT method for measuring global acute malnutrition measure and found that the method was biased and the precision was superior only for sample sizes less than 150 when compared to the standard method. In a manner similar to Dale, our study further investigated the bias and precision of the PROBIT method for different sample sizes using simulated populations.
The PROBIT method showed bias for each of the ten simulated populations, but the direction and magnitude of the average bias was changed depending on the simulated population. For a given simulated population, the average bias was relatively constant for all sample sizes drawn. The 95% half-width confidence interval was lower for the PROBIT method than the standard prevalence method regardless of the sample size or simulated population. The absolute difference in the confidence limits showed the most gains for the PROBIT method for the smaller samples sizes, but the ratio of confidence intervals was relatively constant across all sample sizes.
The PROBIT method will provide gains in precision regardless of the sample size, but the method may be biased. The direction and magnitude of the bias depends on the population it is drawn from.
The measurement of population based estimates of malnutrition in children 6 to 59 months is a major component in assessing the nutrition levels in vulnerable populations. Typically, the prevalence of malnutrition is determined by taking a random survey sample of children from a population and indexing each selected child’s weight and height to the standard World Health Organization (WHO) Growth charts [
The 1995 WHO Technical Report 854 described the use of the PROBIT method to measure child anthropometry indicators in nutrition surveys as a more robust alternative to the standard prevalence-based approach [
The advantage of the PROBIT method is that it will, theoretically, always produce a smaller standard error around a prevalence estimate than the standard prevalence method because it assumes a normal distribution [
Using a simulation based approach; a recent paper by Dale
After reviewing the Dale article, the authors had concerns about the generalizability of the reported aggregated results. One concern was that the results of the Dale study contradicted the theoretical model in which the precision from the PROBIT method should always be superior to the standard prevalence method irrespective of the sample size and not solely for sample sizes <150. The other problem was that the aggregation of the bias and precision for multiple simulated populations may have masked individual population differences. We suspected that bias would vary by population depending on WHZ fit to the normal distribution and the magnitude of the prevalence.
Our study investigated the discrepancy between theoretically expected results of precision for the PROBIT method vs. the standard method and the ones reported by Dale. In addition we examined the variation of the bias of the PROBIT method by simulated population. We first examined the difference in precision between the two methods assuming a population with a perfect fit to the normal distribution. Next, using simulated populations from inflated field surveys in a similar manner as Dale, we examined the bias and precision around prevalence of the WHO defined threshold of WHZ < −2 (wasting) instead of GAM which is defined as a WHZ < −2 or the presence of edema. We used wasting as opposed to GAM because we wanted to look at the behavior of the estimates without edema. Instead of aggregating across simulated populations, we looked at the precision and bias from individual simulated populations of different categories of quality and magnitudes of wasting.
First, to illustrate a theoretical perfect fit of WHZ, the precision for each method was calculated assuming an imaginary distribution of WHZ that perfectly fit a normal population with a mean of 0.71 and SD = 1 - this results in a 10% prevalence estimate. For each method, the precision was calculated for 10 different sample sizes ranging from 50 to 900. The standard error (SE) for the prevalence method was calculated using the normal approximation to the binomial and the 95% Half-Width confidence interval (CI) was calculated by multiplying the SE*1.96. To calculate the 95% confidence intervals around the PROBIT estimate, the SE of the sample mean was calculated first along with 95% CI of the sample mean. Next, the cumulative normal distribution function was used to calculate the upper and lower bounds of the sample mean to obtain the confidence intervals around the PROBIT estimate.
To compare the standard method vs. the PROBIT method, Dale
To measure the performance of the PROBIT methodology vs. the standard prevalence method, they examined both the bias and precision. The bias was measured by subtracting the estimate of GAM produced by each method from the true prevalence and then taking the mean (mean error). In the case of the standard method, the measure is an unbiased estimator of the percent GAM. The precision was measured by calculating the 95% limits of agreement (mean error ±1.96 * SD error) for each of the 15 sample sizes and populations separately. Summary measures of the bias and precision were calculated by taking the average across the 560 simulated populations at each of the 15 sample sizes.
To investigate the performance of PROBIT in the measure of wasting compared to the standard prevalence method, we used a total of 10 nutrition field surveys to create simulated populations of WHZ. We included four nutrition field surveys that were conducted by the US Centers for Disease Control and Prevention in Bhutanese refugee camps from 2007 through 2010 and used a simple random sampling design – these were considered good quality surveys with supervision at each stage of the survey process [
The number of surveys by prevalence and quality categories from the ACF international and FSNAU databases (N = 390)
| High Quality SD* <1.1 | 3 | 48 | 28 |
| Low Quality SD > =1.2 | 141 | 110 | 60 |
* SD, standard deviation.
For all surveys, the WHZ were based on the 2006 WHO Growth Standards [
In a manner similar to Dale, we created 10 simulated populations by inflating each of the surveys to a population of 20,000 using simple random sampling with replacement. From each simulated population, we drew 1,000 samples for each of 10 different sample sizes ranging from 50 to 500 incremented by 50. For each sample, we calculated the prevalence using the standard method of counting the number of children with a WHZ less than −2 and then the PROBIT method using the observed mean and SD. We also examined a robust estimator of the mean using Winsorization, but it was not superior to using the observed mean and SD; therefore, we have omitted those results from the article [
To compare the properties for the two different methods, we calculated the bias and precision for the 10 different sample size categories within each simulated population. The bias for each sample was calculated by subtracting the sample estimate of wasting prevalence from the true prevalence of the simulated population and then calculating average bias within each sample size category. The precision for each simulated population was estimated by calculating the half-width of the 95% CI (1.96 * SD) within each sample size category (n = 1000); the SD is the standard deviation of the sample prevalence estimates. Because the true population mean of each simulated population is a constant, the method we used to calculate the precision around the PROBIT estimate is mathematically equivalent to the 95% limits of agreement (mean error ±1.96 * SD error) ) used in the Dale article.
To examine the magnitude of the bias relative to the true value, the relative bias for the PROBIT was calculated for each simulation by dividing the average bias for a given sample size by the true prevalence value. To show the relative precision of the standard method to the PROBIT method, we calculated the ratio of the 95% half-width CI of the standard method to the PROBIT by dividing the average 95% half-width CI of the standard method by the average 95% half-width CI of the PROBIT.
To examine the deviations of the populations from the normal distribution we calculated the skewness, kurtosis, and the Shapiro-Wilk test for normality [
The analysis for this paper was generated using Excel 2010 and SAS/STAT software, Version 9.3 of the SAS System for Windows [
The precision for PROBIT versus the standard method assuming a WHZ distribution that fits the normal distribution perfectly are presented in Table
The standard errors (SE) and confidence intervals (CI) for the PROBIT method versus the standard prevalence method assuming a WHZ perfect fit to the normal distribution (Mean WHZ = −0.72, SD = 1.0, prevalence = 10.0%)
| 50 | 4.2% | 2.5% | 8.3% | 4.9% | 1.7 | −3.4% |
| 100 | 3.0% | 1.8% | 5.9% | 3.5% | 1.7 | −2.4% |
| 200 | 2.1% | 1.2% | 4.2% | 2.4% | 1.7 | −1.7% |
| 300 | 1.7% | 1.0% | 3.4% | 2.0% | 1.7 | −1.4% |
| 400 | 1.5% | 0.9% | 2.9% | 1.7% | 1.7 | −1.2% |
| 500 | 1.3% | 0.8% | 2.6% | 1.5% | 1.7 | −1.1% |
| 600 | 1.2% | 0.7% | 2.4% | 1.4% | 1.7 | −1.0% |
| 700 | 1.1% | 0.7% | 2.2% | 1.3% | 1.7 | −0.9% |
| 800 | 1.1% | 0.6% | 2.1% | 1.2% | 1.7 | −0.9% |
| 900 | 1.0% | 0.6% | 2.0% | 1.1% | 1.7 | −0.8% |
The descriptive statistics for the original datasets (used as a basis for the simulations) are presented in Table
| Nepal 2007 | 497 | 0 | 4.2 | 4.2 | 0 | −0.49 | 0.92 | 0.389 | 0.26 | −0.16 |
| Nepal 2008 | 502 | 0 | 9.2 | 9.2 | 0 | −0.85 | 0.93 | 0.017 | 0.59 | 0.27 |
| Nepal 2009 | 568 | 0 | 7.2 | 7.2 | 0 | −0.76 | 0.91 | 0.034 | 0.75 | −0.14 |
| Nepal 2010 | 569 | 0 | 8.1 | 8.1 | 0 | −0.65 | 0.91 | 0.006 | 0.51 | 0.05 |
| Sudan North Darfur 2006–11 (high quality, high prevalence) | 954 | 2 | 25.5 | 25.2 | 0.3 | −1.37 | 1.02 | 0.131 | 0.26 | −0.07 |
| Sudan South Darfur 2007-9(high quality, medium prevalence) | 802 | 3 | 19.1 | 19.0 | 0.1 | −1.14 | 1.02 | 0.102 | 0.29 | −0.17 |
| Haiti (Artibonite) 2004–5 (high quality, low prevalence) | 889 | 2 | 5.1 | 5.1 | 0 | −0.25 | 1.04 | 0.817 | 0.27 | −0.02 |
| Somalia 2007(1)(low quality, high prevalence) | 898 | 1 | 22.1 | 22.1 | 0 | −1.03 | 1.29 | <0.001 | 0.27 | 0.31 |
| Somalia 2007(2) (low quality, medium prevalence) | 905 | 0 | 10.3 | 10.2 | 0.1 | −0.40 | 1.29 | <0.001 | 0.15 | 0.13 |
| Somalia 2006 (low quality, low prevalence) | 905 | 14 | 9.3 | 9.1 | 0.2 | −0.37 | 1.23 | 0.005 | 0.30 | 0.19 |
aExcludes observations < −4 WHZ or >4 WHZ from observed mean, bObservations used in the analysis, cNumber of observations that were excluded (<−4 WHZ or >4 WHZ from observed mean), dGAM is defined as WHZ < −2 or the presence of edema.
The bias for the PROBIT methods changed in magnitude and direction depending on the simulation survey used, but the magnitude of the bias for a given simulation dataset was relatively constant regardless of the sample size (Table
Average bias for the PROBIT method by simulation survey
| 50 | 1.09 | 1.57 | 1.37 | −1.16 | 1.32 | 0.87 | −0.15 | 0.84 | 0.45 | 0.35 |
| 100 | 0.88 | 1.40 | 1.25 | −1.21 | 1.41 | 0.91 | −0.16 | 0.70 | 0.34 | 0.38 |
| 150 | 0.87 | 1.29 | 1.37 | −1.24 | 1.52 | 1.04 | −0.25 | 0.73 | 0.57 | 0.33 |
| 200 | 0.90 | 1.32 | 1.37 | −1.23 | 1.48 | 0.99 | −0.18 | 0.76 | 0.45 | 0.42 |
| 250 | 0.84 | 1.29 | 1.27 | −1.23 | 1.46 | 1.04 | −0.22 | 0.70 | 0.46 | 0.31 |
| 300 | 0.90 | 1.36 | 1.34 | −1.30 | 1.44 | 1.13 | −0.26 | 0.79 | 0.52 | 0.39 |
| 350 | 0.87 | 1.40 | 1.29 | −1.25 | 1.43 | 1.10 | −0.26 | 0.86 | 0.53 | 0.39 |
| 400 | 0.88 | 1.44 | 1.32 | −1.29 | 1.36 | 0.98 | −0.25 | 0.76 | 0.50 | 0.39 |
| 450 | 0.92 | 1.39 | 1.29 | −1.29 | 1.42 | 1.07 | −0.26 | 0.71 | 0.54 | 0.36 |
| 500 | 0.86 | 1.39 | 1.28 | −1.26 | 1.45 | 1.03 | −0.29 | 0.79 | 0.52 | 0.34 |
Relative Bias (bias/true estimate) of PROBIT methodology by simulation survey
| 50 | 0.26 | 0.17 | 0.19 | −0.14 | 0.05 | 0.05 | −0.03 | 0.04 | 0.04 | 0.04 |
| 100 | 0.21 | 0.15 | 0.18 | −0.15 | 0.06 | 0.05 | −0.03 | 0.03 | 0.03 | 0.04 |
| 150 | 0.21 | 0.14 | 0.19 | −0.15 | 0.06 | 0.06 | −0.05 | 0.03 | 0.06 | 0.04 |
| 200 | 0.21 | 0.14 | 0.19 | −0.15 | 0.06 | 0.05 | −0.04 | 0.03 | 0.04 | 0.05 |
| 250 | 0.20 | 0.14 | 0.18 | −0.15 | 0.06 | 0.06 | −0.04 | 0.03 | 0.04 | 0.04 |
| 300 | 0.22 | 0.15 | 0.19 | −0.16 | 0.06 | 0.06 | −0.05 | 0.04 | 0.05 | 0.04 |
| 350 | 0.21 | 0.15 | 0.18 | −0.16 | 0.06 | 0.06 | −0.05 | 0.04 | 0.05 | 0.05 |
| 400 | 0.21 | 0.16 | 0.18 | −0.16 | 0.05 | 0.05 | −0.05 | 0.03 | 0.05 | 0.05 |
| 450 | 0.22 | 0.15 | 0.18 | −0.16 | 0.06 | 0.06 | −0.05 | 0.03 | 0.05 | 0.04 |
| 500 | 0.21 | 0.15 | 0.18 | −0.16 | 0.06 | 0.05 | −0.06 | 0.04 | 0.05 | 0.04 |
The precision, represented by the half-width 95% CIs, was superior for the PROBIT method for all the simulation datasets and sample sizes (Table
95% Half-Width confidence intervals for the standard and PROBIT method
| 50 | Standard | 5.4 | 7.9 | 7.0 | 7.7 | 12.1 | 10.9 | 5.9 | 11.5 | 8.6 | 7.9 |
| PROBIT | 4.8 | 6.5 | 6.6 | 5.5 | 9.7 | 9.0 | 4.0 | 8.4 | 6.7 | 5.9 | |
| 100 | Standard | 3.8 | 5.8 | 5.1 | 5.4 | 8.4 | 7.8 | 4.1 | 8.2 | 6.0 | 5.6 |
| PROBIT | 3.3 | 4.6 | 4.8 | 3.8 | 6.8 | 6.3 | 3.0 | 6.0 | 4.7 | 4.1 | |
| 150 | Standard | 3.2 | 4.7 | 4.2 | 4.3 | 6.8 | 6.2 | 3.5 | 6.3 | 4.8 | 4.3 |
| PROBIT | 2.7 | 3.8 | 3.9 | 3.2 | 5.4 | 5.2 | 2.5 | 4.7 | 3.7 | 3.2 | |
| 200 | Standard | 2.7 | 4.1 | 3.4 | 3.8 | 5.9 | 5.4 | 3.0 | 5.6 | 4.4 | 3.9 |
| PROBIT | 2.3 | 3.3 | 3.2 | 2.7 | 4.7 | 4.5 | 2.1 | 4.1 | 3.3 | 2.8 | |
| 250 | Standard | 2.4 | 3.6 | 3.2 | 3.2 | 5.5 | 4.6 | 2.8 | 5.2 | 3.9 | 3.4 |
| PROBIT | 2.1 | 2.9 | 3.0 | 2.5 | 4.4 | 3.9 | 1.9 | 3.9 | 3.0 | 2.5 | |
| 300 | Standard | 2.2 | 3.5 | 2.9 | 3.2 | 4.8 | 4.3 | 2.5 | 4.8 | 3.4 | 3.1 |
| PROBIT | 1.9 | 2.8 | 2.7 | 2.3 | 3.8 | 3.5 | 1.7 | 3.5 | 2.6 | 2.3 | |
| 350 | Standard | 2.0 | 3.1 | 2.7 | 2.8 | 4.5 | 3.9 | 2.3 | 4.2 | 3.2 | 2.9 |
| PROBIT | 1.7 | 2.5 | 2.5 | 2.0 | 3.6 | 3.3 | 1.6 | 3.1 | 2.5 | 2.1 | |
| 400 | Standard | 2.0 | 3.0 | 2.5 | 2.7 | 4.3 | 3.8 | 2.1 | 3.9 | 3.0 | 2.7 |
| PROBIT | 1.7 | 2.3 | 2.4 | 1.9 | 3.3 | 3.2 | 1.5 | 3.0 | 2.4 | 2.0 | |
| 450 | Standard | 1.8 | 2.7 | 2.4 | 2.5 | 4.0 | 3.6 | 2.0 | 3.8 | 2.7 | 2.5 |
| PROBIT | 1.6 | 2.1 | 2.2 | 1.8 | 3.2 | 3.0 | 1.4 | 2.9 | 2.1 | 1.9 | |
| 500 | Standard | 1.8 | 2.6 | 2.2 | 2.3 | 3.8 | 3.5 | 1.9 | 3.5 | 2.7 | 2.5 |
| PROBIT | 1.5 | 2.1 | 2.2 | 1.7 | 3.0 | 2.8 | 1.3 | 2.7 | 2.1 | 1.9 |
The absolute difference in the 95% half-width confidence limit between the PROBIT method - standard prevalence method.
The ratio of standard prevalence method 95% half-width CI to the PROBIT method 95% half-width CI.
We have shown that the magnitude and direction of the bias for the PROBIT methodology depended on the simulation survey dataset in contrast to the Dale article which stated that the PROBIT method overestimates GAM and can be corrected with a uniform value. Our bias was also consistently higher than those reported in the Dale article, but this may be due to the fact that they averaged the bias over 560 surveys and the positive and negative values then cancelled each other out. The relative bias was higher for the Nepal simulation datasets, which all had lower SD (<1) and a higher kurtosis than the other six datasets. On the other hand, all three Somalia datasets that were significantly non-normal by Shapiro-Wilk test showed much lower relative bias. Further analysis is needed to determine if the variation in the magnitude and direction of the bias can be explained by the shape of the WHZ distribution and the degree of non-normality. As suggested in the Dale article, a transformation to make the data more normal may reduce the bias.
Our results show the PROBIT method consistently had higher precision around the prevalence of wasting than the standard method. This was true for the perfect fit to the normal distributions and our simulation results. Our PROBIT method simulations yielded lower half-width CI than the standard method for estimating wasting regardless of the sample size. This is consistent with the theoretical model but is a different result than presented in the Dale article, which concluded that the width of the 95% limits of agreement for the PROBIT methods were superior only for sample sizes <150. Certainly though, the largest absolute gains in precision were for the lower sample sizes. We do not think the difference in precision between our results and Dale’s is due to due to the different simulation data sets used for each study. Our precision results were consistently lower for the PROBIT method despite having intentionally selected surveys of varying quality and prevalence sizes. A possible reason for the discrepancy in the results could be the manner in which Dale et al. aggregated their results when calculating the precision around their estimates. It appears they may have calculated the standard deviation of the mean error for all samples from all the simulated populations. Calculating the precision in this manner would artificially decrease the precision of the PROBIT method because the magnitude and directionality of the bias depends on the simulated population. The standard method would not be affected theoretically because it is an unbiased estimate.
The results of our study are limited by the fact that our analyses used simulated WHZ population data created from sample survey datasets instead of the actual exhaustive population data. We do not know if the true populations would have had distributions closer or farther away from the normal distribution. Also, the influence of measurement error in the field was ignored; this may have caused more bias for the standard prevalence method than the PROBIT method. Another limitation is that we ignored the cluster survey design of the non-Nepal surveys when we created a simulated population of WHZ using simple random sampling. Further investigation is needed to determine the behavior of the PROBIT method when applied to cluster surveys. Also, we looked only at wasting, which does not include edema. Looking at GAM in the populations where edema is high and many of the edema cases have WHZ greater than −2, would add an additional positive bias, since edema cases are not accounted for directly by WHZ distribution.
The results of our study clearly show that the bias from PROBIT method is population dependent and should not be generalized for all populations. In our examples, the PROBIT method consistently outperformed the standard method in terms of precision for all sample sizes as opposed to the Dale article which stated the gain in precision is only for small sample sizes. We agree with the Dale article that the PROBIT method is most advantageous for the smaller sample sizes, where the gains in absolute precision are the greatest. However, the ratio of the precision of the standard method to the PROBIT method was shown to be close to constant across sample sizes, consistent with the theoretical model. Further work is needed to explore whether some of the survey data characteristics (e.g., SD, skewness, kurtosis, prevalence, etc.) can consistently explain the degree and directionality of bias, so caution should be used when applying this method.
Both authors declare that they have no competing interests.
CJB and OOB designed the study, CJB conducted the analysis, and CJB and OOB drafted the manuscript. Both authors read and approved the final manuscript.
We would like to thank Action Against Hunger International and the Food Security and Nutrition Analysis Unit for Somalia for the use of their nutrition surveys for this study.