Serogroups and strains differ by location, although hypervirulent strains were identified throughout the country.
We describe the epidemiology of invasive meningococcal disease in South Africa from August 1999 through July 2002, as reported to a laboratory-based surveillance system.
Despite progress in our understanding of the epidemiology of meningococcal disease, infection with
Meningococcal disease associated with epidemics in Africa is generally caused by a limited number of genetically defined clonal groups (
In South Africa, meningococcal disease (a clinically reportable condition since 1920) is endemic, with seasonal increases during the winter months (
To better understand the recent epidemiology of invasive meningococcal disease in South Africa, we analyzed cases reported to a national laboratory-based surveillance system for a 3-year period, from August 1999 through July 2002. Isolates available from cases reported during this period were characterized further.
National laboratory-based surveillance for invasive disease caused by
Serogroup was determined for 615 isolates by using latex slide agglutination with monoclonal antiserum to capsular polysaccharides A, B, C, X, Y, Z, and W135 (Murex Biotech Limited, Dartford, England, United Kingdom). Strains that did not react with these antisera were sent to the World Health Organization Collaborating Center for Reference and Research on Meningococci, Oslo, Norway, for serogrouping.
PFGE was performed on 573 viable isolates of serogroup A, B, C, W135, and Y meningococci by using a method adapted from Popovic et al. (
MLST was performed on 46 isolates as described by Maiden et al. (
Incidence rates were calculated on the basis of the number of cases reported during the 12-month periods from August 1 through July 31 of the following year, divided by mid-year population estimates for years 2000, 2001, and 2002, respectively, obtained from the South African Health Information Systems Programme. The χ2 test for linear trend using EpiInfo 6 (version 6.04d; Centers for Disease Control and Prevention, Atlanta, Georgia, USA) was used to assess statistical significance of the changes during the 3-year period.
From August 1999 through July 2002, 854 cases of invasive meningococcal disease were reported; age was known for 756 (88%) patients. Most cases (645, 76%) were diagnosed from positive culture of CSF specimens (with or without positive cultures from blood specimens); the other 209 (24%) were positive on blood culture alone. The incidence rates of disease reported to the network increased from 0.52 per 100,000 persons in 1999–2000, to 0.62 in 2000–2001, and 0.77 in 2001–2002 (p<0.001). Western Cape Province was responsible for 37% of cases reported nationally, and Gauteng Province was responsible for 41% of cases reported nationally (
Map of South Africa with estimated provincial populations in 2002 (45.5 million [m] population). Values in boxes are in millions.
Incidence rates for all reported and serogroup B–confirmed meningococcal disease by year in Western Cape Province. *χ2 test for trend.
Incidence rates for all reported and serogroup A–confirmed meningococcal disease by year in Gauteng Province. * χ2 test for trend.
Of the 854 cases of laboratory-confirmed meningococcal disease reported to the surveillance network, 615 (72%) had viable isolates available for serogrouping; 453 (74%) of these were isolated from CSF and 162 (26%) from blood culture alone. Serogrouping of the viable meningococcal isolates showed the following: serogroup B, 251 isolates (41%); A, 142 (23%); Y, 130 (21%); C, 50 (8%); W135, 31 (5%); X, 8 (1%); Z, 2 (<1%); and 29E, 1 (<1%) (
| Year | Serogroup | Province* | Total | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| EC | FS | GA | KZ | LIM | MP | NC | NW | WC | N (%)† | ||
| Aug 1999–Jul 2000 | A | –‡ | – | 9 | 1 | – | – | – | 1 | 4 | 15 (8) |
| B | 6 | – | 12 | 4 | – | 3 | – | – | 81 | 106 (56) | |
| C | 2 | 2 | 2 | – | – | – | – | – | 14 | 20 (10) | |
| W135 | – | – | 3 | 3 | – | – | – | – | 4 | 10 (5) | |
| X | – | – | 1 | – | – | – | – | – | 2 | 3 (2) | |
| Y | 2 | 6 | 10 | 7 | – | – | – | – | 11 | 36 (19) | |
| No isolate available | 2 | 9 | 10 | 4 | 2 | 2 | 10 | 39 | |||
| Total | 12 | 8 | 46 | 25 | 4 | 5 | – | 3 | 126 | 229 | |
| Aug 2000–Jul 2001 | A | – | – | 34 | 2 | – | 5 | – | 3 | – | 44 (23) |
| B | 6 | 3 | 13 | 3 | – | 1 | – | 1 | 56 | 83 (43) | |
| C | 3 | – | 3 | – | – | 1 | – | 1 | 4 | 12 (6) | |
| W135 | – | – | 7 | – | – | – | – | – | 1 | 8 (4) | |
| X | – | – | 1 | – | – | – | – | – | 1 | 2 (1) | |
| Y | 2 | 14 | 13 | 1 | 2 | 3 | 1 | 1 | 5 | 42 (22) | |
| Z | – | – | 2 | – | – | – | – | – | – | 2 (1) | |
| No isolate available | 3 | 51 | 2 | 6 | 1 | 19 | 82 | ||||
| Total | 14 | 17 | 124 | 8 | 8 | 11 | 1 | 6 | 86 | 275 | |
| Aug 2001–Jul 2002 | A | – | – | 78 | 1 | – | 1 | – | 2 | 1 | 83 (36) |
| B | 3 | 4 | 15 | – | – | – | 1 | 1 | 38 | 62 (27) | |
| C | 1 | – | 6 | – | – | – | 1 | – | 10 | 18 (8) | |
| 29E | – | – | – | – | – | – | – | – | 1 | 1 (<1) | |
| W135 | 1 | – | 9 | – | – | – | – | 1 | 2 | 13 (6) | |
| X | – | – | 2 | – | – | – | – | – | 1 | 3 (1) | |
| Y | 3 | 14 | 20 | 4 | – | 1 | 2 | 1 | 7 | 52 (22) | |
| No isolate available | 3 | 2 | 51 | 5 | 10 | 1 | 1 | 45 | 118 | ||
| Total | 11 | 20 | 181 | 10 | – | 12 | 5 | 6 | 105 | 350 | |
*EC, Eastern Cape; FS, Free State; GA, Gauteng; KZ, KwaZulu Natal; LIM, Limpopo; MP, Mpumalanga; NC, Northern Cape; NW, North West; WC, Western Cape. †Percentages denote the percentage of that particular serogroup over the total number of serogrouped isolates for that year. ‡No cases reported.
Seventy percent (175/251) of serogroup B disease was reported from Western Cape Province, where the number of cases decreased progressively from 81 in the first year (1999–2000) to 38 (in the third year, 2001–2002) (
The age-specific proportion of disease in patients with known age varied for serogroups. The highest proportion of serogroup A (38 [33%] of 114) and C (10 [20%] of 50) disease occurred in the 15- to 24-year age group; the highest proportion of disease caused by serogroup B (70 [29%] of 238) and Y (42 [38%] of 112) was in infants <1 year of age. Serogroup W135 was found in equal proportion in the <1-year age group (6 [23%] of 26) and 15–24 age group (7 [27%] of 26). Incidence rates for the most common serogroups (A, B, and Y) for the last year of surveillance showed the highest rates of disease in children <1 year of age (
Annual age-specific incidence rates for confirmed serogroup A, B, and Y meningococcal disease in South Africa, as reported from August 2001 through July 2002.
Of 615
| Serogroup | PFGE clusters | No. of isolates | MLST results | |||||
|---|---|---|---|---|---|---|---|---|
| 1999/2000, n | 2000/2001, n | 2001/2002, n | Total, N (%) | ST | ST complex | n | ||
| A | Total | 13 | 38 | 72 | 123 | |||
| Cluster A-1 | 5 | 34 | 70 | 109 (89) | 1 | ST-1/subgroup I/II | 12 | |
| Small clusters/single isolates | 8 | 4 | 2 | 14 (11) | 7 | ST-5/subgroup III complex | 2 | |
| 254 | ST-254 complex | 1 | ||||||
| 175 | None | 1 | ||||||
| B | Total | 107 | 77 | 58 | 242 | |||
| Cluster B-1 | 38 | 28 | 25 | 91 (38) | 33 | ST-32/ET-5 complex | 4 | |
| 4239 | ST-32/ET-5 complex | 1 | ||||||
| Cluster B-2 | 12 | 7 | 10 | 29 (12) | 154 | ST-41/44/lineage III | 2 | |
| 4242 | ST-41/44/lineage III | 1 | ||||||
| Cluster B-3 | 11 | 9 | 3 | 23 (9.5) | ||||
| Cluster B-4 | 7 | 4 | 6 | 17 (7) | 35 | ST-35 complex | 1 | |
| Cluster B-5 | 3 | 6 | 5 | 14 (6) | ||||
| Small clusters/single isolates | 36 | 23 | 9 | 68 (28) | ||||
| C | Total | 20 | 12 | 17 | 49 | |||
| Cluster C-1 | 5 | 5 | 5 | 15 (31) | 11 | ST-11/ET-37 complex | 2 | |
| Cluster C-2 | 3 | 2 | 4 | 9 (18) | 865 | None | 2 | |
| Cluster C-3 | 4 | 1 | 4 | 9 (18) | 33 | ST-32/ET-5 complex | 2 | |
| Small clusters/single isolates | 8 | 4 | 4 | 16 (33) | ||||
| W135 | Total | 9 | 9 | 13 | 31 | |||
| Cluster W-1 | 5 | 7 | 10 | 23 (74) | 11 | ST-11/ET-37 complex | 4 | |
| Cluster W-2 | 2 | 1 | 0 | 3 (10) | 4241 | ST-4241/ST-22 complex | 1 | |
| Small clusters/single isolates | 2 | 1 | 3 | 5 (16) | ||||
| Y | Total | 40 | 38 | 50 | 128 | |||
| Cluster Y-1 | 28 | 25 | 39 | 92 (72) | 175 | None | 6 | |
| Cluster Y-2 | 5 | 8 | 6 | 19 (15) | 23 | ST-23 complex/cluster A3 | 2 | |
| 4245 | ST-23 complex/cluster A3 | 1 | ||||||
| Small clusters/single isolates | 7 | 5 | 5 | 17 (13) | 175 | None | 1 | |
*PFGE, pulsed-field gel electrophoresis; MLST, multilocus sequence typing; ST, sequence type.
PFGE analysis of 123 serogroup A isolates showed a highly clonal population structure with a large cluster (cluster A-1) representing 89% (109/123) (
Pulsed-field gel electrophoresis dendrogram indicating the genetic relationship among serogroup A meningococcal isolates in South Africa, August 1999–July 2002.
In total, 242 serogroup B
Pulsed-field gel electrophoresis dendrogram indicating the genetic relationship among serogroup B meningococcal isolates in South Africa, August 1999–July 2002.
The second largest cluster (cluster B-2) comprised 12% (29/242) of the total number of isolates characterized. Three isolates belonged to ST-41/44 lineage III, 2 of which were ST-154. The third isolate had a novel allele at the
Clusters B-3, B-4, and B-5 comprised 9.5% (23/242), 7% (17), and 6% (14) of all serogroup B isolates, respectively. The remaining isolates were clustered into small groups or were unrelated.
PFGE of the 49 serogroup C meningococcal isolates showed 3 main clusters (clusters C-1, C-2, and C-3) (
Isolates belonging to clusters C-2 and C-3 each made up 18% (9/49) of the total number of isolates characterized (
Of the 31 serogroup W135 meningococci isolates analyzed by PFGE, a distinct cluster (cluster W-1) of isolates comprising 23 (74%) of 31 isolates was found (
PFGE analysis of the 128 serogroup Y meningococcal isolates showed 2 clusters (clusters Y-1 and Y-2;
A second cluster, cluster Y-2, comprised 15% (19/128) of isolates (
The endemic nature and low incidence rates of meningococcal disease in the study period confirm an epidemiology related more closely to industrialized countries (
Overall, the age group at greatest risk for disease was children <1 year of age, although there were some differences by serogroup. Serogroup B has been previously described to occur predominantly in infants (
The high proportion of laboratory-confirmed cases from Gauteng and Western Cape Provinces could reflect better reporting by laboratories in these areas. These 2 provinces also had the most clinical notifications, which would be less reliant on laboratory facilities, to the Department of Health since the 1970s (
The incidence rate of reported meningococcal disease increased from 1999 to 2002, and serogroup A, most prevalent in Gauteng Province, was the only serogroup of viable isolates to increase significantly. Cyclical changes in meningococcal disease occurring every 8 to 10 years have been noted in this province (
The increase in the number of cases of serogroup A reported from Gauteng Province was associated specifically with strains belonging to a distinct cluster identified by PFGE. Selected isolates from this cluster were confirmed as belonging to ST-1 (subgroup I/II) complex. These strains have caused epidemics worldwide (
The high proportion of sporadic serogroup B disease in the Western Cape has been well described since the late 1970s (
Serogroup Y accounts for approximately one third of all invasive meningococcal disease in the United States (
Serogroup C disease associated with sporadic disease and occasional outbreaks occurs in both industrialized and developing nations (
Serogroup W135, associated with little disease worldwide (
In conclusion, we identified sporadic and seasonal meningococcal disease in South Africa during the study period, caused by an increasing number of cases due to a clone of serogroup A in Gauteng Province. Diverse strains of serogroup B were responsible for stable prevalence of disease in Western Cape Province. Nationally, 21% of meningococcal disease was due to serogroup Y. Continued surveillance will provide valuable information for the development of public health strategies to minimize the risk for outbreaks in South Africa and neighboring countries.
We thank all the clinicians and laboratory staff throughout the country who report cases and send isolates for national surveillance; the reviewers for their constructive criticism; and Stephanie Schrag and Leonard Mayer for kind assistance in finalizing the article.
This research was supported by grants from the Medical Research Council, the National Institute for Communicable Diseases, and the University of the Witwatersrand, South Africa.
Mr Coulson worked for the National Institute for Communicable Diseases, Johannesburg, South Africa, at the time this article was prepared. Currently, he is in the doctoral program in infectious diseases at the University of Georgia, Athens, USA. His research activities focus on the role of genes on the pathogenicity island in
GERMS-SA: Sandeep Vasaikar (Eastern Cape); Nolan Janse van Rensberg, Peter Smith (Free State); Khatija Ahmed, Heather Crewe-Brown, Mike Dove, Charles Feldman, Alan Karstaedt, Olga Perovic, Pyu-Pyu Sein, Ruth Lekalakala (Gauteng); Wim Sturm (KwaZulu Natal); Ken Hamese (Limpopo); Keith Bauer (Mpumalanga); Denise Roditi, Rena Hoffmann, Lynne Liebowitz, John Simpson, Andrew Whitelaw (Western Cape); Adrian Brink (AMPATH); Claire Heney (Lancet); Martinus Senekal (PathCare).