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Analysis of 60 Reported Glioma Risk SNPs Replicates Published GWAS Findings but Fails to Replicate Associations From Published Candidate-Gene Studies

CITE Title : Analysis of 60 Reported Glioma Risk SNPs Replicates Published GWAS Findings but Fails to Replicate Associations From Published Candidate-Gene Studies Personal Author(s) : Walsh, Kyle M.;Anderson, Erik;Hansen, Helen M.;Decker, Paul A.;Kosel, Matt L.;Kollmeyer, Thomas;Rice, Terri;Zheng, Shichun;Xiao, Yuanyuan;Chang, Jeffrey S.;McCoy, Lucie S.;Bracci, Paige M.;Wiemels, Joe L.;Pico, Alexander R.;Smirnov, Ivan;Lachance, Daniel H.;Sicotte, Hugues;Eckel-Passow, Jeanette E.;Wiencke, John K.;Jenkins, Robert B.;Wrensch, Margaret R.; Published Date : December 31 2012 Source : Genet Epidemiol. 2012; 37(2):222-228 URL : https://stacks.cdc.gov/view/cdc/33575 Walsh, Kyle M. et al. (2012). Analysis of 60 Reported Glioma Risk SNPs Replicates Published GWAS Findings but Fails to Replicate Associations From Published Candidate-Gene Studies. 37(2). Walsh, Kyle M. et al. "Analysis of 60 Reported Glioma Risk SNPs Replicates Published GWAS Findings but Fails to Replicate Associations From Published Candidate-Gene Studies" 37, no. 2 (2012) Walsh, Kyle M. et al. "Analysis of 60 Reported Glioma Risk SNPs Replicates Published GWAS Findings but Fails to Replicate Associations From Published Candidate-Gene Studies" vol. 37, no. 2, 2012 Export RIS Citation Information.

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Walsh, Kyle M. ;

Anderson, Erik

December 31 2012 | Genet Epidemiol. 2012; 37(2):222-228

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Genomewide association studies (GWAS) and candidate-gene studies have implicated single-nucleotide polymorphisms (SNPs) in at least 45 different genes...
Germline polymorphisms in myeloid-associated genes are not associated with survival in glioma patients

CITE Title : Germline polymorphisms in myeloid-associated genes are not associated with survival in glioma patients Personal Author(s) : Jacobs, Daniel I.;Liu, Yanhong;Gabrusiewicz, Konrad;Tsavachidis, Spiridon;Armstrong, Georgina N.;Zhou, Renke;Wei, Jun;Ivan, Cristina;Calin, George;Molinaro, Annette M.;Rice, Terri;Bracci, Paige M.;Hansen, Helen M.;Wiencke, John K.;Wrensch, Margaret R.;Heimberger, Amy B.;Bondy, Melissa L.; Published Date : Sep 30 2017 Source : J Neurooncol. 136(1):33-39 URL : https://stacks.cdc.gov/view/cdc/61782 Jacobs, Daniel I. et al. (2017). Germline polymorphisms in myeloid-associated genes are not associated with survival in glioma patients. 136(1). Jacobs, Daniel I. et al. "Germline polymorphisms in myeloid-associated genes are not associated with survival in glioma patients" 136, no. 1 (2017) Jacobs, Daniel I. et al. "Germline polymorphisms in myeloid-associated genes are not associated with survival in glioma patients" vol. 136, no. 1, 2017 Export RIS Citation Information.

:

Jacobs, Daniel I. ;

Liu, Yanhong

Sep 30 2017 | J Neurooncol. 136(1):33-39

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Immune cells of myeloid origin, including microglia, macrophages, and myeloid-derived suppressor cells adopt immunosuppressive phenotypes that support...
Variants near TERT and TERC influencing telomere length are associated with high-grade glioma risk

CITE Title : Variants near TERT and TERC influencing telomere length are associated with high-grade glioma risk Personal Author(s) : Walsh, Kyle M.;Codd, Veryan;Smirnov, Ivan V.;Rice, Terri;Decker, Paul A.;Hansen, Helen M.;Kollmeyer, Thomas;Kosel, Matthew L.;Molinaro, Annette M.;McCoy, Lucie S.;Bracci, Paige M.;Cabriga, Belinda S.;Pekmezci, Melike;Zheng, Shichun;Wiemels, Joseph L.;Pico, Alexander R.;Tihan, Tarik;Berger, Mitchell S.;Chang, Susan M.;Prados, Michael D.;Lachance, Daniel H.;O’Neill, Brian P.;Sicotte, Hugues;Eckel-Passow, Jeanette E.;van der Harst, Pim;Wiencke, John K.;Samani, Nilesh J.;Jenkins, Robert B.;Wrensch, Margaret R.; Corporate Authors(s) : ENGAGE Consortium Telomere Group Published Date : 7 2014;7-2014; Source : Nat Genet. 46(7):731-735 URL : https://stacks.cdc.gov/view/cdc/27881 Walsh, Kyle M. et al. (2014). Variants near TERT and TERC influencing telomere length are associated with high-grade glioma risk. 46(7). Walsh, Kyle M. et al. "Variants near TERT and TERC influencing telomere length are associated with high-grade glioma risk" 46, no. 7 (2014) Walsh, Kyle M. et al. "Variants near TERT and TERC influencing telomere length are associated with high-grade glioma risk" vol. 46, no. 7, 2014 Export RIS Citation Information.

:

Walsh, Kyle M. ;

Codd, Veryan

7 2014 | Nat Genet. 46(7):731-735

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Glioma, the most common central nervous system cancer in adults, has poor prognosis. Here we identify a new SNP associated with glioma risk, rs1920116...
A heritable missense polymorphism in CDKN2A confers strong risk of childhood acute lymphoblastic leukemia and is preferentially selected during clonal evolution

CITE Title : A heritable missense polymorphism in CDKN2A confers strong risk of childhood acute lymphoblastic leukemia and is preferentially selected during clonal evolution Personal Author(s) : Walsh, Kyle M.;de Smith, Adam J.;Hansen, Helen M.;Smirnov, Ivan V.;Gonseth, Semira;Endicott, Alyson A.;Xiao, Jianqiao;Rice, Terri;Fu, Cecilia H.;McCoy, Lucie S.;Lachance, Daniel H.;Eckel-Passow, Jeanette E.;Wiencke, John K.;Jenkins, Robert B.;Wrensch, Margaret R.;Ma, Xiaomei;Metayer, Catherine;Wiemels, Joseph L.; Published Date : Nov 2 2015 Source : Cancer Res. 75(22):4884-4894. URL : https://stacks.cdc.gov/view/cdc/36507 Walsh, Kyle M. et al. (2015). A heritable missense polymorphism in CDKN2A confers strong risk of childhood acute lymphoblastic leukemia and is preferentially selected during clonal evolution. 75(22). Walsh, Kyle M. et al. "A heritable missense polymorphism in CDKN2A confers strong risk of childhood acute lymphoblastic leukemia and is preferentially selected during clonal evolution" 75, no. 22 (2015) Walsh, Kyle M. et al. "A heritable missense polymorphism in CDKN2A confers strong risk of childhood acute lymphoblastic leukemia and is preferentially selected during clonal evolution" vol. 75, no. 22, 2015 Export RIS Citation Information.

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Walsh, Kyle M. ;

de Smith, Adam J.

Nov 2 2015 | Cancer Res. 75(22):4884-4894.

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Genome-wide association studies (GWAS) have identified SNPs in six genes that are associated with childhood acute lymphoblastic leukemia (ALL). A lead...
SSBP2 variants are associated with survival in glioblastoma patients

CITE Title : SSBP2 variants are associated with survival in glioblastoma patients Personal Author(s) : Xiao, Yuanyuan;Decker, Paul A.;Rice, Terri;McCoy, Lucie S.;Smirnov, Ivan;Patoka, Joseph S.;Hansen, Helen M.;Wiemels, Joe L.;Tihan, Tarik;Prados, Michael D.;Chang, Susan M.;Berger, Mitchel S.;Kosel, Matthew L.;Fridley, Brooke L.;Lachance, Daniel H.;O’Neill, Brian Patrick;Buckner, Jan C.;Thompson, Reid C.;Nabors, L. B.;Olson, Jeffrey J.;Brem, Steve;Madden, Melissa H.;Browning, James E.;Wiencke, John K.;Egan, Kathleen M.;Jenkins, Robert B.;Wrensch, Margaret R.; Published Date : 6 1 2012;6-1-; Source : Clin Cancer Res. 18(11):3154-3162 URL : https://stacks.cdc.gov/view/cdc/33534 Xiao, Yuanyuan et al. (2012). SSBP2 variants are associated with survival in glioblastoma patients. 18(11). Xiao, Yuanyuan et al. "SSBP2 variants are associated with survival in glioblastoma patients" 18, no. 11 (2012) Xiao, Yuanyuan et al. "SSBP2 variants are associated with survival in glioblastoma patients" vol. 18, no. 11, 2012 Export RIS Citation Information.

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Xiao, Yuanyuan ;

Decker, Paul A.

6 1 2012 | Clin Cancer Res. 18(11):3154-3162

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PurposeGlioblastoma is a devastating, incurable disease with few known prognostic factors. Here we present the first genome-wide survival and validati...
Female chromosome X mosaicism is age-related and preferentially affects the inactivated X chromosome

CITE Title : Female chromosome X mosaicism is age-related and preferentially affects the inactivated X chromosome Personal Author(s) : Machiela, Mitchell J.;Zhou, Weiyin;Karlins, Eric;Sampson, Joshua N.;Freedman, Neal D.;Yang, Qi;Hicks, Belynda;Dagnall, Casey;Hautman, Christopher;Jacobs, Kevin B.;Abnet, Christian C.;Aldrich, Melinda C.;Amos, Christopher;Amundadottir, Laufey T.;Arslan, Alan A.;Beane-Freeman, Laura E.;Berndt, Sonja I.;Black, Amanda;Blot, William J.;Bock, Cathryn H.;Bracci, Paige M.;Brinton, Louise A.;Bueno-de-Mesquita, H Bas;Burdett, Laurie;Buring, Julie E.;Butler, Mary A.;Canzian, Federico;Carreón, Tania;Chaffee, Kari G.;Chang, I-Shou;Chatterjee, Nilanjan;Chen, Chu;Chen, Constance;Chen, Kexin;Chung, Charles C.;Cook, Linda S.;Crous Bou, Marta;Cullen, Michael;Davis, Faith G.;De Vivo, Immaculata;Ding, Ti;Doherty, Jennifer;Duell, Eric J.;Epstein, Caroline G.;Fan, Jin-Hu;Figueroa, Jonine D.;Fraumeni, Joseph F.;Friedenreich, Christine M.;Fuchs, Charles S.;Gallinger, Steven;Gao, Yu-Tang;Gapstur, Susan M.;Garcia-Closas, Montserrat;Gaudet, Mia M.;Gaziano, J. Michael;Giles, Graham G.;Gillanders, Elizabeth M.;Giovannucci, Edward L.;Goldin, Lynn;Goldstein, Alisa M.;Haiman, Christopher A.;Hallmans, Goran;Hankinson, Susan E.;Harris, Curtis C.;Henriksson, Roger;Holly, Elizabeth A.;Hong, Yun-Chul;Hoover, Robert N.;Hsiung, Chao A.;Hu, Nan;Hu, Wei;Hunter, David J.;Hutchinson, Amy;Jenab, Mazda;Johansen, Christoffer;Khaw, Kay-Tee;Kim, Hee Nam;Kim, Yeul Hong;Kim, Young Tae;Klein, Alison P.;Klein, Robert;Koh, Woon-Puay;Kolonel, Laurence N.;Kooperberg, Charles;Kraft, Peter;Krogh, Vittorio;Kurtz, Robert C.;LaCroix, Andrea;Lan, Qing;Landi, Maria Teresa;Marchand, Loic Le;Li, Donghui;Liang, Xiaolin;Liao, Linda M.;Lin, Dongxin;Liu, Jianjun;Lissowska, Jolanta;Lu, Lingeng;Magliocco, Anthony M.;Malats, Nuria;Matsuo, Keitaro;McNeill, Lorna H.;McWilliams, Robert R.;Melin, Beatrice S.;Mirabello, Lisa;Moore, Lee;Olson, Sara H.;Orlow, Irene;Park, Jae Yong;Patiño-Garcia, Ana;Peplonska, Beata;Peters, Ulrike;Petersen, Gloria M.;Pooler, Loreall;Prescott, Jennifer;Prokunina-Olsson, Ludmila;Purdue, Mark P.;Qiao, You-Lin;Rajaraman, Preetha;Real, Francisco X.;Riboli, Elio;Risch, Harvey A.;Rodriguez-Santiago, Benjamin;Ruder, Avima M.;Savage, Sharon A.;Schumacher, Fredrick;Schwartz, Ann G.;Schwartz, Kendra L.;Seow, Adeline;Wendy Setiawan, Veronica;Severi, Gianluca;Shen, Hongbing;Sheng, Xin;Shin, Min-Ho;Shu, Xiao-Ou;Silverman, Debra T.;Spitz, Margaret R.;Stevens, Victoria L.;Stolzenberg-Solomon, Rachael;Stram, Daniel;Tang, Ze-Zhong;Taylor, Philip R.;Teras, Lauren R.;Tobias, Geoffrey S.;Van Den Berg, David;Visvanathan, Kala;Wacholder, Sholom;Wang, Jiu-Cun;Wang, Zhaoming;Wentzensen, Nicolas;Wheeler, William;White, Emily;Wiencke, John K.;Wolpin, Brian M.;Wong, Maria Pik;Wu, Chen;Wu, Tangchun;Wu, Xifeng;Wu, Yi-Long;Wunder, Jay S.;Xia, Lucy;Yang, Hannah P.;Yang, Pan-Chyr;Yu, Kai;Zanetti, Krista A.;Zeleniuch-Jacquotte, Anne;Zheng, Wei;Zhou, Baosen;Ziegler, Regina G.;Perez-Jurado, Luis A.;Caporaso, Neil E.;Rothman, Nathaniel;Tucker, Margaret;Dean, Michael C.;Yeager, Meredith;Chanock, Stephen J.; Published Date : Jun 13 2016 Source : Nat Commun. 2016; 7. URL : https://stacks.cdc.gov/view/cdc/40463 Machiela, Mitchell J. et al. (2016). Female chromosome X mosaicism is age-related and preferentially affects the inactivated X chromosome. 7 Machiela, Mitchell J. et al. "Female chromosome X mosaicism is age-related and preferentially affects the inactivated X chromosome" 7 (2016) Machiela, Mitchell J. et al. "Female chromosome X mosaicism is age-related and preferentially affects the inactivated X chromosome" vol. 7, 2016 Export RIS Citation Information.

:

Machiela, Mitchell J. ;

Zhou, Weiyin

Jun 13 2016 | Nat Commun. 2016; 7.

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To investigate large structural clonal mosaicism of chromosome X, we analysed the SNP microarray intensity data of 38,303 women from cancer genome-wid...
The landscape of recombination in African Americans

CITE Title : The landscape of recombination in African Americans Personal Author(s) : Hinch, Anjali G.;Tandon, Arti;Patterson, Nick;Song, Yunli;Rohland, Nadin;Palmer, Cameron D.;Chen, Gary K.;Wang, Kai;Buxbaum, Sarah G.;Akylbekova, Meggie;Aldrich, Melinda C.;Ambrosone, Christine B.;Amos, Christopher;Bandera, Elisa V.;Berndt, Sonja I.;Bernstein, Leslie;Blot, William J.;Bock, Cathryn H.;Boerwinkle, Eric;Cai, Qiuyin;Caporaso, Neil;Casey, Graham;Cupples, L. Adrienne;Deming, Sandra L.;Diver, W. Ryan;Divers, Jasmin;Fornage, Myriam;Gillanders, Elizabeth M.;Glessner, Joseph;Harris, Curtis C.;Hu, Jennifer J.;Ingles, Sue A.;Isaacs, Williams;John, Esther M.;Kao, W. H. Linda;Keating, Brendan;Kittles, Rick A.;Kolonel, Laurence N.;Larkin, Emma;Le Marchand, Loic;McNeill, Lorna H.;Millikan, Robert C.;Murphy, Adam;Musani, Solomon;Neslund-Dudas, Christine;Nyante, Sarah;Papanicolaou, George J.;Press, Michael F.;Psaty, Bruce M.;Reiner, Alex P.;Rich, Stephen S.;Rodriguez-Gil, Jorge L.;Rotter, Jerome I.;Rybicki, Benjamin A.;Schwartz, Ann G.;Signorello, Lisa B.;Spitz, Margaret;Strom, Sara S.;Thun, Michael J.;Tucker, Margaret A.;Wang, Zhaoming;Wiencke, John K.;Witte, John S.;Wrensch, Margaret;Wu, Xifeng;Yamamura, Yuko;Zanetti, Krista A.;Zheng, Wei;Ziegler, Regina G.;Zhu, Xiaofeng;Redline, Susan;Hirschhorn, Joel N.;Henderson, Brian E.;Taylor, Herman A.;Price, Alkes L.;Hakonarson, Hakon;Chanock, Stephen J.;Haiman, Christopher A.;Wilson, James G.;Reich, David;Myers, Simon R.; Published Date : Jul 20 2011 Source : Nature. 476(7359):170-175. URL : https://stacks.cdc.gov/view/cdc/41840 Hinch, Anjali G. et al. (2011). The landscape of recombination in African Americans. 476(7359). Hinch, Anjali G. et al. "The landscape of recombination in African Americans" 476, no. 7359 (2011) Hinch, Anjali G. et al. "The landscape of recombination in African Americans" vol. 476, no. 7359, 2011 Export RIS Citation Information.

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Hinch, Anjali G. ;

Tandon, Arti

Jul 20 2011 | Nature. 476(7359):170-175.

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Recombination, together with mutation, gives rise to genetic variation in populations. Here we leverage the recent mixture of people of African and Eu...
Serum macrophage-derived chemokine/CCL22 levels are associated with glioma risk, CD4 T cell lymphopenia and survival time

CITE Title : Serum macrophage-derived chemokine/CCL22 levels are associated with glioma risk, CD4 T cell lymphopenia and survival time Personal Author(s) : Zhou, Mi;Bracci, Paige M.;McCoy, Lucie S.;Hsuang, George;Wiemels, Joseph L.;Rice, Terri;Zheng, Shichun;Kelsey, Karl T.;Wrensch, Margaret R.;Wiencke, John K.; Published Date : 8 15 2015;8-15-; Source : Int J Cancer. 137(4):826-836 URL : https://stacks.cdc.gov/view/cdc/32967 Zhou, Mi et al. (2015). Serum macrophage-derived chemokine/CCL22 levels are associated with glioma risk, CD4 T cell lymphopenia and survival time. 137(4). Zhou, Mi et al. "Serum macrophage-derived chemokine/CCL22 levels are associated with glioma risk, CD4 T cell lymphopenia and survival time" 137, no. 4 (2015) Zhou, Mi et al. "Serum macrophage-derived chemokine/CCL22 levels are associated with glioma risk, CD4 T cell lymphopenia and survival time" vol. 137, no. 4, 2015 Export RIS Citation Information.

:

Zhou, Mi ;

Bracci, Paige M.

8 15 2015 | Int J Cancer. 137(4):826-836

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Defects in antigen presenting cell function have been implicated in glioma immunosuppression. We measured peripheral CCL22, a dendritic cell/macrophag...
Age-specific genome-wide association study in glioblastoma identifies increased proportion of ‘lower grade glioma’-like features associated with younger age

CITE Title : Age-specific genome-wide association study in glioblastoma identifies increased proportion of ‘lower grade glioma’-like features associated with younger age Personal Author(s) : Ostrom, Quinn T.;Kinnersley, Ben;Armstrong, Georgina;Rice, Terri;Chen, Yanwen;Wiencke, John K.;McCoy, Lucie S.;Hansen, Helen M.;Amos, Christopher I.;Bernstein, Jonine L.;Claus, Elizabeth B.;Eckel-Passow, Jeanette E.;Il’yasova, Dora;Johansen, Christoffer;Lachance, Daniel H.;Lai, Rose K.;Merrell, Ryan T.;Olson, Sara H.;Sadetzki, Siegal;Schildkraut, Joellen M.;Shete, Sanjay;Rubin, Joshua B.;Andersson, Ulrika;Rajaraman, Preetha;Chanock, Stephen J.;Linet, Martha S.;Wang, Zhaoming;Yeager, Meredith;Houlston, Richard S.;Jenkins, Robert B.;Wrensch, Margaret R.;Melin, Beatrice;Bondy, Melissa L.;Barnholtz-Sloan, Jill. S.; Published Date : 11 15 2018;11-15-; Source : Int J Cancer. 143(10):2359-2366 URL : https://stacks.cdc.gov/view/cdc/60142 Ostrom, Quinn T. et al. (2018). Age-specific genome-wide association study in glioblastoma identifies increased proportion of ‘lower grade glioma’-like features associated with younger age. 143(10). Ostrom, Quinn T. et al. "Age-specific genome-wide association study in glioblastoma identifies increased proportion of ‘lower grade glioma’-like features associated with younger age" 143, no. 10 (2018) Ostrom, Quinn T. et al. "Age-specific genome-wide association study in glioblastoma identifies increased proportion of ‘lower grade glioma’-like features associated with younger age" vol. 143, no. 10, 2018 Export RIS Citation Information.

:

Ostrom, Quinn T. ;

Kinnersley, Ben

11 15 2018 | Int J Cancer. 143(10):2359-2366

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Glioblastoma (GBM) is the most common malignant brain tumor in the United States. Incidence of GBM increases with age, and younger age-at-diagnosis is...
Adult Infiltrating Gliomas with WHO 2016 Integrated Diagnosis: Additional Prognostic Roles of ATRX and TERT

CITE Title : Adult Infiltrating Gliomas with WHO 2016 Integrated Diagnosis: Additional Prognostic Roles of ATRX and TERT Personal Author(s) : Pekmezci, Melike;Rice, Terri;Molinaro, Annette M.;Walsh, Kyle M.;Decker, Paul A.;Hansen, Helen;Sicotte, Hugues;Kollmeyer, Thomas M.;McCoy, Lucie S.;Sarkar, Gobinda;Perry, Arie;Giannini, Caterina;Tihan, Tarik;Berger, Mitchel S.;Wiemels, Joseph L.;Bracci, Paige M.;Eckel-Passow, Jeanette E.;Lachance, Daniel H.;Clarke, Jennifer;Taylor, Jennie W.;Luks, Tracy;Wiencke, John K.;Jenkins RB, Robert B.;Wrensch, Margaret R; Published Date : Mar 02 2017 Source : Acta Neuropathol. 133(6):1001-1016. URL : https://stacks.cdc.gov/view/cdc/45797 Pekmezci, Melike et al. (2017). Adult Infiltrating Gliomas with WHO 2016 Integrated Diagnosis: Additional Prognostic Roles of ATRX and TERT. 133(6). Pekmezci, Melike et al. "Adult Infiltrating Gliomas with WHO 2016 Integrated Diagnosis: Additional Prognostic Roles of ATRX and TERT" 133, no. 6 (2017) Pekmezci, Melike et al. "Adult Infiltrating Gliomas with WHO 2016 Integrated Diagnosis: Additional Prognostic Roles of ATRX and TERT" vol. 133, no. 6, 2017 Export RIS Citation Information.

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Pekmezci, Melike ;

Rice, Terri

Mar 02 2017 | Acta Neuropathol. 133(6):1001-1016.

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The "integrated diagnosis" for infiltrating gliomas in the 2016 revised World Health Organization (WHO) classification of tumors of the central nervou...