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Complete Circularized Genome Sequences of Four Strains of Elizabethkingia anophelis, Including Two Novel Strains Isolated from Wild-Caught Anopheles sinensis

CITE Title : Complete Circularized Genome Sequences of Four Strains of Elizabethkingia anophelis, Including Two Novel Strains Isolated from Wild-Caught Anopheles sinensis Personal Author(s) : Pei, Dong;Nicholson, Ainsley C.;Jiang, Jinjin;Chen, Huiying;Whitney, Anne M.;Villarma, Aaron;Bell, Melissa;Humrighouse, Ben;Rowe, Lori A.;Sheth, Mili;Batra, Dhwani;Juieng, Phalasy;Loparev, Vladimir N.;McQuiston, John R.;Lan, Yuhao;Ma, Yajun;Xu, Jiannong; Published Date : Nov 22 2017 Source : Genome Announc. 5(47). URL : https://stacks.cdc.gov/view/cdc/50274 Pei, Dong et al. (2017). Complete Circularized Genome Sequences of Four Strains of Elizabethkingia anophelis, Including Two Novel Strains Isolated from Wild-Caught Anopheles sinensis. 5(47). Pei, Dong et al. "Complete Circularized Genome Sequences of Four Strains of Elizabethkingia anophelis, Including Two Novel Strains Isolated from Wild-Caught Anopheles sinensis" 5, no. 47 (2017) Pei, Dong et al. "Complete Circularized Genome Sequences of Four Strains of Elizabethkingia anophelis, Including Two Novel Strains Isolated from Wild-Caught Anopheles sinensis" vol. 5, no. 47, 2017 Export RIS Citation Information.

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Pei, Dong ;

Nicholson, Ainsley C.

Nov 22 2017 | Genome Announc. 5(47).

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We provide complete circularized genome sequences of two mosquito-derived Elizabethkingia anophelis strains with draft sequences currently in the publ...
Genome Sequence of the Amphotericin B-Resistant Candida duobushaemulonii Strain B09383

CITE Title : Genome Sequence of the Amphotericin B-Resistant Candida duobushaemulonii Strain B09383 Personal Author(s) : Chow, Nancy A.;Gade, Lalitha;Batra, Dhwani;Rowe, Lori A.;Juieng, Phalasy;Loparev, Vladimir N.;Litvintseva, Anastasia P.; Published Date : Mar 29 2018 Source : Genome Announc. 6(13). URL : https://stacks.cdc.gov/view/cdc/53547 Chow, Nancy A. et al. (2018). Genome Sequence of the Amphotericin B-Resistant Candida duobushaemulonii Strain B09383. 6(13). Chow, Nancy A. et al. "Genome Sequence of the Amphotericin B-Resistant Candida duobushaemulonii Strain B09383" 6, no. 13 (2018) Chow, Nancy A. et al. "Genome Sequence of the Amphotericin B-Resistant Candida duobushaemulonii Strain B09383" vol. 6, no. 13, 2018 Export RIS Citation Information.

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Chow, Nancy A. ;

Gade, Lalitha

Mar 29 2018 | Genome Announc. 6(13).

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is a drug-resistant yeast that can cause invasive candidiasis. Here, we report the first genome sequence of |, isolate B09383, generated using PacBio ...
High-Quality Whole-Genome Sequences for 77 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing

CITE Title : High-Quality Whole-Genome Sequences for 77 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing Personal Author(s) : Patel, Pooja N.;Lindsey, Rebecca L.;Garcia-Toledo, Lisley;Rowe, Lori A.;Batra, Dhwani;Whitley, Samuel W.;Drapeau, Daniel;Stoneburg, Devon;Martin, Haley;Juieng, Phalasy;Loparev, Vladimir N.;Strockbine, Nancy; Published Date : May 10 2018 Source : Genome Announc. 6(19). URL : https://stacks.cdc.gov/view/cdc/55633 Patel, Pooja N. et al. (2018). High-Quality Whole-Genome Sequences for 77 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing. 6(19). Patel, Pooja N. et al. "High-Quality Whole-Genome Sequences for 77 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing" 6, no. 19 (2018) Patel, Pooja N. et al. "High-Quality Whole-Genome Sequences for 77 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing" vol. 6, no. 19, 2018 Export RIS Citation Information.

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Patel, Pooja N. ;

Lindsey, Rebecca L.

May 10 2018 | Genome Announc. 6(19).

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Shiga toxin-producing | (STEC) is an enteric foodborne pathogen that can cause mild to severe illness. Here, we report the availability of high-qualit...
Finished Annotated Genome Sequence of Burkholderia pseudomallei Strain Bp1651, a Multidrug-Resistant Clinical Isolate

CITE Title : Finished Annotated Genome Sequence of Burkholderia pseudomallei Strain Bp1651, a Multidrug-Resistant Clinical Isolate Personal Author(s) : Bugrysheva, Julia V.;Sue, David;Hakovirta, Janetta;Loparev, Vladimir N.;Knipe, Kristen;Sammons, Scott A.;Ranganathan-Ganakammal, Satishkumar;Changayil, Shankar;Srinivasamoorthy, Ganesh;Weil, Michael R.;Tatusov, Roman L.;Gee, Jay E.;Elrod, Mindy G.;Hoffmaster, Alex R.;Weigel, Linda M.; Published Date : Dec 03 2015 Source : Genome Announc. 2015; 3(6). URL : https://stacks.cdc.gov/view/cdc/36628 Bugrysheva, Julia V. et al. (2015). Finished Annotated Genome Sequence of Burkholderia pseudomallei Strain Bp1651, a Multidrug-Resistant Clinical Isolate. 3(6). Bugrysheva, Julia V. et al. "Finished Annotated Genome Sequence of Burkholderia pseudomallei Strain Bp1651, a Multidrug-Resistant Clinical Isolate" 3, no. 6 (2015) Bugrysheva, Julia V. et al. "Finished Annotated Genome Sequence of Burkholderia pseudomallei Strain Bp1651, a Multidrug-Resistant Clinical Isolate" vol. 3, no. 6, 2015 Export RIS Citation Information.

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Bugrysheva, Julia V. ;

Sue, David

Dec 03 2015 | Genome Announc. 2015; 3(6).

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Burkholderia pseudomallei strain Bp1651, a human isolate, is resistant to all clinically relevant antibiotics. We report here on the finished genome s...
Complete Genome Sequences of Four Strains from the 2015-2016 Elizabethkingia anophelis Outbreak

CITE Title : Complete Genome Sequences of Four Strains from the 2015-2016 Elizabethkingia anophelis Outbreak Personal Author(s) : Nicholson, Ainsley C.;Whitney, Anne M.;Emery, Brian D.;Bell, Melissa E.;Gartin, Jarrett T.;Humrighouse, Ben W.;Loparev, Vladimir N.;Batra, Dhwani;Sheth, Mili;Rowe, Lori A.;Juieng, Phalasy;Knipe, Kristen;Gulvik, Christopher;McQuiston, John R.; Published Date : Jun 16 2016 Source : Genome Announc. 2016; 4(3). URL : https://stacks.cdc.gov/view/cdc/40109 Nicholson, Ainsley C. et al. (2016). Complete Genome Sequences of Four Strains from the 2015-2016 Elizabethkingia anophelis Outbreak. 4(3). Nicholson, Ainsley C. et al. "Complete Genome Sequences of Four Strains from the 2015-2016 Elizabethkingia anophelis Outbreak" 4, no. 3 (2016) Nicholson, Ainsley C. et al. "Complete Genome Sequences of Four Strains from the 2015-2016 Elizabethkingia anophelis Outbreak" vol. 4, no. 3, 2016 Export RIS Citation Information.

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Nicholson, Ainsley C. ;

Whitney, Anne M.

Jun 16 2016 | Genome Announc. 2016; 4(3).

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The complete circularized genome sequences of selected specimens from the largest known Elizabethkingia anophelis outbreak to date are described here....
Conserved Patterns of Symmetric Inversion in the Genome Evolution of Bordetella Respiratory Pathogens

CITE Title : Conserved Patterns of Symmetric Inversion in the Genome Evolution of Bordetella Respiratory Pathogens Personal Author(s) : Weigand, Michael R.;Peng, Yanhui;Batra, Dhwani;Burroughs, Mark;Davis, Jamie K.;Knipe, Kristen;Loparev, Vladimir N.;Johnson, Taccara;Juieng, Phalasy;Rowe, Lori A.;Sheth, Mili;Tang, Kevin;Unoarumhi, Yvette;Williams, Margaret M.;Tondella, M. Lucia; Published Date : 2019 Nov 19 Source : mSystems. 4(6) URL : https://stacks.cdc.gov/view/cdc/92644 Weigand, Michael R. et al. (2019). Conserved Patterns of Symmetric Inversion in the Genome Evolution of Bordetella Respiratory Pathogens. 4(6). Weigand, Michael R. et al. "Conserved Patterns of Symmetric Inversion in the Genome Evolution of Bordetella Respiratory Pathogens" 4, no. 6 (2019) Weigand, Michael R. et al. "Conserved Patterns of Symmetric Inversion in the Genome Evolution of Bordetella Respiratory Pathogens" vol. 4, no. 6, 2019 Export RIS Citation Information.

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Weigand, Michael R. ;

Peng, Yanhui

2019 Nov 19 | mSystems. 4(6)

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Whooping cough (pertussis), primarily caused by |, has resurged in the United States, and circulating strains exhibit considerable chromosome structur...
Complete Genome Sequences for Three Chromosomes of the Burkholderia stabilis Type Strain (ATCC BAA-67)

CITE Title : Complete Genome Sequences for Three Chromosomes of the Burkholderia stabilis Type Strain (ATCC BAA-67) Personal Author(s) : Bugrysheva, Julia V.;Cherney, Blake;Sue, David;Conley, Andrew B.;Rowe, Lori A.;Knipe, Kristen M.;Frace, Michael A.;Loparev, Vladimir N.;Avila, Julie R.;Anderson, Kevin;Hodge, David R.;Pillai, Segaran P.;Weigel, Linda M.; Published Date : Nov 17 2016 Source : Genome Announc. 2016; 4(6). URL : https://stacks.cdc.gov/view/cdc/42970 Bugrysheva, Julia V. et al. (2016). Complete Genome Sequences for Three Chromosomes of the Burkholderia stabilis Type Strain (ATCC BAA-67). 4(6). Bugrysheva, Julia V. et al. "Complete Genome Sequences for Three Chromosomes of the Burkholderia stabilis Type Strain (ATCC BAA-67)" 4, no. 6 (2016) Bugrysheva, Julia V. et al. "Complete Genome Sequences for Three Chromosomes of the Burkholderia stabilis Type Strain (ATCC BAA-67)" vol. 4, no. 6, 2016 Export RIS Citation Information.

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Bugrysheva, Julia V. ;

Cherney, Blake

Nov 17 2016 | Genome Announc. 2016; 4(6).

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We report here the complete annotated genome sequence of the Burkholderia stabilis type strain ATCC BAA-67. There were three circular chromosomes with...
Three Genome Sequences of Legionella pneumophila subsp. pascullei Associated with Colonization of a Health Care Facility

CITE Title : Three Genome Sequences of Legionella pneumophila subsp. pascullei Associated with Colonization of a Health Care Facility Personal Author(s) : Kozak-Muiznieks, Natalia A.;Morrison, Shatavia S.;Sammons, Scott;Rowe, Lori A.;Sheth, Mili;Frace, Michael;Lucas, Claressa E.;Loparev, Vladimir N.;Raphael, Brian H.;Winchell, Jonas M.; Published Date : May 05 2016 Source : Genome Announc. 2016; 4(3). URL : https://stacks.cdc.gov/view/cdc/39315 Kozak-Muiznieks, Natalia A. et al. (2016). Three Genome Sequences of Legionella pneumophila subsp. pascullei Associated with Colonization of a Health Care Facility. 4(3). Kozak-Muiznieks, Natalia A. et al. "Three Genome Sequences of Legionella pneumophila subsp. pascullei Associated with Colonization of a Health Care Facility" 4, no. 3 (2016) Kozak-Muiznieks, Natalia A. et al. "Three Genome Sequences of Legionella pneumophila subsp. pascullei Associated with Colonization of a Health Care Facility" vol. 4, no. 3, 2016 Export RIS Citation Information.

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Kozak-Muiznieks, Natalia A. ;

Morrison, Shatavia S.

May 05 2016 | Genome Announc. 2016; 4(3).

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Here, we report the complete genome sequences of three Legionella pneumophila subsp. pascullei strains (including both serogroup 1 and 5 strains) that...
High-Quality Complete and Draft Genome Sequences for Three Escherichia spp. and Three Shigella spp. Generated with Pacific Biosciences and Illumina Sequencing and Optical Mapping

CITE Title : High-Quality Complete and Draft Genome Sequences for Three Escherichia spp. and Three Shigella spp. Generated with Pacific Biosciences and Illumina Sequencing and Optical Mapping Personal Author(s) : Schroeder, Max R.;Juieng, Phalasy;Batra, Dhwani;Knipe, Kristen;Rowe, Lori A.;Sheth, Mili;Smith, Peyton;Garcia-Toledo, Lisley;Loparev, Vladimir N.;Lindsey, Rebecca L.; Published Date : Jan 04 2018 Source : Genome Announc. 2018; 6(1). URL : https://stacks.cdc.gov/view/cdc/50876 Schroeder, Max R. et al. (2018). High-Quality Complete and Draft Genome Sequences for Three Escherichia spp. and Three Shigella spp. Generated with Pacific Biosciences and Illumina Sequencing and Optical Mapping. 6(1). Schroeder, Max R. et al. "High-Quality Complete and Draft Genome Sequences for Three Escherichia spp. and Three Shigella spp. Generated with Pacific Biosciences and Illumina Sequencing and Optical Mapping" 6, no. 1 (2018) Schroeder, Max R. et al. "High-Quality Complete and Draft Genome Sequences for Three Escherichia spp. and Three Shigella spp. Generated with Pacific Biosciences and Illumina Sequencing and Optical Mapping" vol. 6, no. 1, 2018 Export RIS Citation Information.

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Schroeder, Max R. ;

Juieng, Phalasy

Jan 04 2018 | Genome Announc. 2018; 6(1).

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Escherichia spp., including E. albertii and E. coli, Shigella dysenteriae, and S. flexneri are causative agents of foodborne disease. We report here r...
Genomic insights into multidrug-resistance, mating and virulence in Candida auris and related emerging species

CITE Title : Genomic insights into multidrug-resistance, mating and virulence in Candida auris and related emerging species Personal Author(s) : Muñoz, José F.;Gade, Lalitha;Chow, Nancy A.;Loparev, Vladimir N.;Juieng, Phalasy;Berkow, Elizabeth L.;Farrer, Rhys A.;Litvintseva, Anastasia P.;Cuomo, Christina A.; Published Date : December 17 2018 Source : Nat Commun. 9 URL : https://stacks.cdc.gov/view/cdc/77385 Muñoz, José F. et al. (2018). Genomic insights into multidrug-resistance, mating and virulence in Candida auris and related emerging species. 9 Muñoz, José F. et al. "Genomic insights into multidrug-resistance, mating and virulence in Candida auris and related emerging species" 9 (2018) Muñoz, José F. et al. "Genomic insights into multidrug-resistance, mating and virulence in Candida auris and related emerging species" vol. 9, 2018 Export RIS Citation Information.

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Muñoz, José F. ;

Gade, Lalitha

December 17 2018 | Nat Commun. 9

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Candida auris is an emergent multidrug-resistant fungal pathogen causing increasing reports of outbreaks. While distantly related to C. albicans and C...
Draft Genome Sequences of Bordetella holmesii Strains from Blood (F627) and Nasopharynx (H558)

CITE Title : Draft Genome Sequences of Bordetella holmesii Strains from Blood (F627) and Nasopharynx (H558) Personal Author(s) : Tatti, Kathleen M.;Loparev, Vladimir N.;RanganathanGanakammal, Satishkumar;Changayil, Shankar;Frace, Michael;Weil, Michael Ryan;Sammons, Scott;MacCannell, Duncan;Mayer, Leonard W.;Tondella, M. Lucia; Published Date : 2013 Mar-Apr Source : Genome Announc. 2013; 1(2). URL : https://stacks.cdc.gov/view/cdc/13390 Tatti, Kathleen M. et al. (2013). Draft Genome Sequences of Bordetella holmesii Strains from Blood (F627) and Nasopharynx (H558). 1(2). Tatti, Kathleen M. et al. "Draft Genome Sequences of Bordetella holmesii Strains from Blood (F627) and Nasopharynx (H558)" 1, no. 2 (2013) Tatti, Kathleen M. et al. "Draft Genome Sequences of Bordetella holmesii Strains from Blood (F627) and Nasopharynx (H558)" vol. 1, no. 2, 2013 Export RIS Citation Information.

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Tatti, Kathleen M. ;

Loparev, Vladimir N.

2013 Mar-Apr | Genome Announc. 2013; 1(2).

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Bordetella holmesii, a human pathogen, can confound the diagnosis of respiratory illness caused by Bordetella pertussis. We present the draft genome s...
High-Quality Genome Sequence of an Escherichia coli O157 Strain Carrying an mcr-1 Resistance Gene Isolated from a Patient in the United States

CITE Title : High-Quality Genome Sequence of an Escherichia coli O157 Strain Carrying an mcr-1 Resistance Gene Isolated from a Patient in the United States Personal Author(s) : Lindsey, Rebecca L.;Batra, Dhwani;Rowe, Lori;Loparev, Vladimir N.;Stripling, Devon;Garcia-Toledo, Lisley;Knipe, Kristen;Juieng, Phalasy;Sheth, Mili;Martin, Haley;Laufer Halpin, Alison; Published Date : Mar 16 2017 Source : Genome Announc. 2017; 5(11). URL : https://stacks.cdc.gov/view/cdc/44811 Lindsey, Rebecca L. et al. (2017). High-Quality Genome Sequence of an Escherichia coli O157 Strain Carrying an mcr-1 Resistance Gene Isolated from a Patient in the United States. 5(11). Lindsey, Rebecca L. et al. "High-Quality Genome Sequence of an Escherichia coli O157 Strain Carrying an mcr-1 Resistance Gene Isolated from a Patient in the United States" 5, no. 11 (2017) Lindsey, Rebecca L. et al. "High-Quality Genome Sequence of an Escherichia coli O157 Strain Carrying an mcr-1 Resistance Gene Isolated from a Patient in the United States" vol. 5, no. 11, 2017 Export RIS Citation Information.

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Lindsey, Rebecca L. ;

Batra, Dhwani

Mar 16 2017 | Genome Announc. 2017; 5(11).

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Enterobacteriaceae carrying plasmid-mediated colistin resistance have been found around the world. We report here the high-quality whole-genome sequen...
Molecular detection of airborne Coccidioides in Tucson, Arizona

CITE Title : Molecular detection of airborne Coccidioides in Tucson, Arizona Personal Author(s) : Chow, Nancy A.;Griffin, Dale W.;Barker, Bridget M.;Loparev, Vladimir N.;Litvintseva, Anastasia P.; Published Date : 8 1 2016;8-1-; Source : Med Mycol. 54(6):584-592 URL : https://stacks.cdc.gov/view/cdc/40549 Chow, Nancy A. et al. (2016). Molecular detection of airborne Coccidioides in Tucson, Arizona. 54(6). Chow, Nancy A. et al. "Molecular detection of airborne Coccidioides in Tucson, Arizona" 54, no. 6 (2016) Chow, Nancy A. et al. "Molecular detection of airborne Coccidioides in Tucson, Arizona" vol. 54, no. 6, 2016 Export RIS Citation Information.

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Chow, Nancy A. ;

Griffin, Dale W.

8 1 2016 | Med Mycol. 54(6):584-592

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Environmental surveillance of the soil-dwelling fungus Coccidioides is essential for the prevention of Valley fever, a disease primarily caused by inh...
PacBio Genome Sequences of Escherichia coli Serotype O157:H7, Diffusely Adherent E. coli, and Salmonella enterica Strains, All Carrying Plasmids with an mcr-1 Resistance Gene

CITE Title : PacBio Genome Sequences of Escherichia coli Serotype O157:H7, Diffusely Adherent E. coli, and Salmonella enterica Strains, All Carrying Plasmids with an mcr-1 Resistance Gene Personal Author(s) : Lindsey, Rebecca L.;Batra, Dhwani;Smith, Peyton;Patel, Pooja N.;Tagg, Kaitlin A.;Garcia-Toledo, Lisley;Loparev, Vladimir N.;Juieng, Phalasy;Sheth, Mili;Joung, Yoo Jin;Rowe, Lori A.; Published Date : 10 11 2018;2018; Source : Microbiol Resour Announc. 7(14) URL : https://stacks.cdc.gov/view/cdc/60458 Lindsey, Rebecca L. et al. (2018). PacBio Genome Sequences of Escherichia coli Serotype O157:H7, Diffusely Adherent E. coli, and Salmonella enterica Strains, All Carrying Plasmids with an mcr-1 Resistance Gene. 7(14). Lindsey, Rebecca L. et al. "PacBio Genome Sequences of Escherichia coli Serotype O157:H7, Diffusely Adherent E. coli, and Salmonella enterica Strains, All Carrying Plasmids with an mcr-1 Resistance Gene" 7, no. 14 (2018) Lindsey, Rebecca L. et al. "PacBio Genome Sequences of Escherichia coli Serotype O157:H7, Diffusely Adherent E. coli, and Salmonella enterica Strains, All Carrying Plasmids with an mcr-1 Resistance Gene" vol. 7, no. 14, 2018 Export RIS Citation Information.

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Lindsey, Rebecca L. ;

Batra, Dhwani

10 11 2018 | Microbiol Resour Announc. 7(14)

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We report here Illumina-corrected PacBio whole-genome sequences of an | serotype O157:H7 strain (2017C-4109), an | serotype O[undetermined]:H2 strain ...