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Next-generation sequencing reveals large connected networks of intra-host HCV variants

CITE Title : Next-generation sequencing reveals large connected networks of intra-host HCV variants Personal Author(s) : Campo, David S;Dimitrova, Zoya;Yamasaki, Lilian;Skums, Pavel;Lau, Daryl TY;Vaughan, Gilberto;Forbi, Joseph C;Teo, Chong-Gee;Khudyakov, Yury; Published Date : Jul 14 2014 Source : BMC Genomics. 2014; 15(Suppl 5):S4. URL : https://stacks.cdc.gov/view/cdc/26771 Campo, David S et al. (2014). Next-generation sequencing reveals large connected networks of intra-host HCV variants. 15 Campo, David S et al. "Next-generation sequencing reveals large connected networks of intra-host HCV variants" 15 (2014) Campo, David S et al. "Next-generation sequencing reveals large connected networks of intra-host HCV variants" vol. 15, 2014 Export RIS Citation Information.

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Campo, David S ;

Dimitrova, Zoya

Jul 14 2014 | BMC Genomics. 2014; 15(Suppl 5):S4.

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BackgroundNext-generation sequencing (NGS) allows for sampling numerous viral variants from infected patients. This provides a novel opportunity to re...
Good laboratory practice for clinical next-generation sequencing informatics pipelines

CITE Title : Good laboratory practice for clinical next-generation sequencing informatics pipelines Personal Author(s) : Gargis, Amy S;Kalman, Lisa;Bick, David P;da Silva, Cristina;Dimmock, David P;Funke, Birgit H;Gowrisankar, Sivakumar;Hegde, Madhuri R;Kulkarni, Shashikant;Mason, Christopher E;Nagarajan, Rakesh;Voelkerding, Karl V;Worthey, Elizabeth A;Aziz, Nazneen;Barnes, John;Bennett, Sarah F;Bisht, Himani;Church, Deanna M;Dimitrova, Zoya;Gargis, Shaw R;Hafez, Nabil;Hambuch, Tina;Hyland, Fiona C L;Ann Luna, Ruth;MacCannell, Duncan;Mann, Tobias;McCluskey, Megan R;McDaniel, Timothy K;Ganova-Raeva, Lilia M;Rehm, Heidi L;Reid, Jeffrey;Campo, David S;Resnick, Richard B;Ridge, Perry G;Salit, Marc L;Skums, Pavel;Wong, Lee-Jun C;Zehnbauer, Barbara A;Zook, Justin M;Lubin, Ira M; Published Date : Jul 2015;7-2015; Source : Nat Biotechnol. 33(7):689-693 URL : https://stacks.cdc.gov/view/cdc/78370 Gargis, Amy S et al. (2015). Good laboratory practice for clinical next-generation sequencing informatics pipelines. 33(7). Gargis, Amy S et al. "Good laboratory practice for clinical next-generation sequencing informatics pipelines" 33, no. 7 (2015) Gargis, Amy S et al. "Good laboratory practice for clinical next-generation sequencing informatics pipelines" vol. 33, no. 7, 2015 Export RIS Citation Information.

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Gargis, Amy S ;

Kalman, Lisa

Jul 2015 | Nat Biotechnol. 33(7):689-693

No Description
Efficient error correction for next-generation sequencing of viral amplicons

CITE Title : Efficient error correction for next-generation sequencing of viral amplicons Personal Author(s) : Skums, Pavel;Dimitrova, Zoya;Campo, David S;Vaughan, Gilberto;Rossi, Livia;Forbi, Joseph C;Yokosawa, Jonny;Zelikovsky, Alex;Khudyakov, Yury; Published Date : Jun 25 2012 Source : BMC Bioinformatics. 2012; 13(Suppl 10):S6. URL : https://stacks.cdc.gov/view/cdc/10839 Skums, Pavel et al. (2012). Efficient error correction for next-generation sequencing of viral amplicons. 13 Skums, Pavel et al. "Efficient error correction for next-generation sequencing of viral amplicons" 13 (2012) Skums, Pavel et al. "Efficient error correction for next-generation sequencing of viral amplicons" vol. 13, 2012 Export RIS Citation Information.

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Skums, Pavel ;

Dimitrova, Zoya

Jun 25 2012 | BMC Bioinformatics. 2012; 13(Suppl 10):S6.

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BackgroundNext-generation sequencing allows the analysis of an unprecedented number of viral sequence variants from infected patients, presenting a no...
Changing Molecular Epidemiology of Hepatitis A Virus Infection, United States, 1996–2019

CITE Title : Changing Molecular Epidemiology of Hepatitis A Virus Infection, United States, 1996–2019 Personal Author(s) : Ramachandran, Sumathi;Xia, Guo-Liang;Dimitrova, Zoya;Lin, Yulin;Montgomery, Martha;Augustine, Ryan;Kamili, Saleem;Khudyakov, Yury; Published Date : 2021 Source : Emerg Infect Dis. 27(6):1742-1745 URL : https://stacks.cdc.gov/view/cdc/106880 Ramachandran, Sumathi et al. (2021). Changing Molecular Epidemiology of Hepatitis A Virus Infection, United States, 1996–2019. 27(6). Ramachandran, Sumathi et al. "Changing Molecular Epidemiology of Hepatitis A Virus Infection, United States, 1996–2019" 27, no. 6 (2021) Ramachandran, Sumathi et al. "Changing Molecular Epidemiology of Hepatitis A Virus Infection, United States, 1996–2019" vol. 27, no. 6, 2021 Export RIS Citation Information.

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Ramachandran, Sumathi ;

Xia, Guo-Liang

2021 | Emerg Infect Dis. 27(6):1742-1745

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Hepatitis A virus (HAV) genotype IA was most common among strains tested in US outbreak investigations and surveillance during 1996-2015. However, HAV...
HCV transmission in high-risk communities in Bulgaria

CITE Title : HCV transmission in high-risk communities in Bulgaria Personal Author(s) : Ganova-Raeva, Lilia;Dimitrova, Zoya;Alexiev, Ivailo;Punkova, Lili;Sue, Amanda;Xia, Guo-liang;Gancheva, Anna;Dimitrova, Reneta;Kostadinova, Asya;Golkocheva-Markova, Elitsa;Khudyakov, Yury; Published Date : March 05 2019 Source : PLoS One. 14(3) URL : https://stacks.cdc.gov/view/cdc/79719 Ganova-Raeva, Lilia et al. (2019). HCV transmission in high-risk communities in Bulgaria. 14(3). Ganova-Raeva, Lilia et al. "HCV transmission in high-risk communities in Bulgaria" 14, no. 3 (2019) Ganova-Raeva, Lilia et al. "HCV transmission in high-risk communities in Bulgaria" vol. 14, no. 3, 2019 Export RIS Citation Information.

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Ganova-Raeva, Lilia ;

Dimitrova, Zoya

March 05 2019 | PLoS One. 14(3)

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BackgroundThe rate of HIV infection in Bulgaria is low. However, the rate of HCV-HIV-coinfection and HCV infection is high, especially among high-risk...
Hepatitis C Virus Antigenic Convergence

CITE Title : Hepatitis C Virus Antigenic Convergence Personal Author(s) : Campo, David S.;Dimitrova, Zoya;Yokosawa, Jonny;Hoang, Duc;Perez, Nestor O.;Ramachandran, Sumathi;Khudyakov, Yury; Published Date : Feb 15 2012 Source : Sci Rep. 2012; 2. URL : https://stacks.cdc.gov/view/cdc/8209 Campo, David S. et al. (2012). Hepatitis C Virus Antigenic Convergence. 2 Campo, David S. et al. "Hepatitis C Virus Antigenic Convergence" 2 (2012) Campo, David S. et al. "Hepatitis C Virus Antigenic Convergence" vol. 2, 2012 Export RIS Citation Information.

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Campo, David S. ;

Dimitrova, Zoya

Feb 15 2012 | Sci Rep. 2012; 2.

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Vaccine development against hepatitis C virus (HCV) is hindered by poor understanding of factors defining cross-immunoreactivity among heterogeneous e...
A large HCV transmission network enabled a fast-growing HIV outbreak in rural Indiana, 2015

CITE Title : A large HCV transmission network enabled a fast-growing HIV outbreak in rural Indiana, 2015 Personal Author(s) : Ramachandran, Sumathi;Thai, Hong;Forbi, Joseph C.;Galang, Romeo Regi;Dimitrova, Zoya;Xia, Guo-liang;Lin, Yulin;Punkova, Lili T.;Pontones, Pamela R.;Gentry, Jessica;Blosser, Sara J.;Lovchik, Judith;Switzer, William M.;Teshale, Eyasu;Peters, Philip;Ward, John;Khudyakov, Yury; Corporate Authors(s) : Hepatitis C Investigation Team Published Date : Nov 15 2018 Source : EBioMedicine. 37:374-381 URL : https://stacks.cdc.gov/view/cdc/61840 Ramachandran, Sumathi et al. (2018). A large HCV transmission network enabled a fast-growing HIV outbreak in rural Indiana, 2015. 37 Ramachandran, Sumathi et al. "A large HCV transmission network enabled a fast-growing HIV outbreak in rural Indiana, 2015" 37 (2018) Ramachandran, Sumathi et al. "A large HCV transmission network enabled a fast-growing HIV outbreak in rural Indiana, 2015" vol. 37, 2018 Export RIS Citation Information.

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Ramachandran, Sumathi ;

Thai, Hong

Nov 15 2018 | EBioMedicine. 37:374-381

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BackgroundA high prevalence (92.3%) of hepatitis C virus (HCV) co-infection among HIV patients identified during a large HIV outbreak associated with ...