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A Phylogeny-Based Global Nomenclature System and Automated Annotation Tool for H1 Hemagglutinin Genes from Swine Influenza A Viruses

CITE Title : A Phylogeny-Based Global Nomenclature System and Automated Annotation Tool for H1 Hemagglutinin Genes from Swine Influenza A Viruses Personal Author(s) : Anderson, Tavis K.;Macken, Catherine A.;Lewis, Nicola S.;Scheuermann, Richard H.;Van Reeth, Kristien;Brown, Ian H.;Swenson, Sabrina L.;Simon, Gaëlle;Saito, Takehiko;Berhane, Yohannes;Ciacci-Zanella, Janice;Pereda, Ariel;Davis, C. Todd;Donis, Ruben O.;Webby, Richard J.;Vincent, Amy L.; Published Date : 2016 Nov-Dec Source : mSphere. 2016; 1(6). URL : https://stacks.cdc.gov/view/cdc/43662 Anderson, Tavis K. et al. (2016). A Phylogeny-Based Global Nomenclature System and Automated Annotation Tool for H1 Hemagglutinin Genes from Swine Influenza A Viruses. 1(6). Anderson, Tavis K. et al. "A Phylogeny-Based Global Nomenclature System and Automated Annotation Tool for H1 Hemagglutinin Genes from Swine Influenza A Viruses" 1, no. 6 (2016) Anderson, Tavis K. et al. "A Phylogeny-Based Global Nomenclature System and Automated Annotation Tool for H1 Hemagglutinin Genes from Swine Influenza A Viruses" vol. 1, no. 6, 2016 Export RIS Citation Information.

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Anderson, Tavis K. ;

Macken, Catherine A.

2016 Nov-Dec | mSphere. 2016; 1(6).

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The H1 subtype of influenza A viruses (IAVs) has been circulating in swine since the 1918 human influenza pandemic. Over time, and aided by further in...
Comparison of 2016–17 and Previous Epizootics of Highly Pathogenic Avian Influenza H5 Guangdong Lineage in Europe

CITE Title : Comparison of 2016–17 and Previous Epizootics of Highly Pathogenic Avian Influenza H5 Guangdong Lineage in Europe Personal Author(s) : Alarcon, Pablo;Brouwer, Adam;Venkatesh, Divya;Duncan, Daisy;Dovas, Chrysostomos I.;Georgiades, George;Monne, Isabella;Fusaro, Alice;Dan, Adam;Śmietanka, Krzysztof;Ragias, Vassilios;Breed, Andrew C.;Chassalevris, Taxiarchis;Goujgoulova, Gabriela;Hjulsager, Charlotte Kristiane;Ryan, Eoin;Sánchez, Azucena;Niqueux, Eric;Tammiranta, Niina;Zohari, Siamak;Stroud, David A.;Savić, Vladimir;Lewis, Nicola S.;Brown, Ian H.; Published Date : December 2018 Source : Emerg Infect Dis. 24(12):2270-2283 URL : https://stacks.cdc.gov/view/cdc/61331 Alarcon, Pablo et al. (2018). Comparison of 2016–17 and Previous Epizootics of Highly Pathogenic Avian Influenza H5 Guangdong Lineage in Europe. 24(12). Alarcon, Pablo et al. "Comparison of 2016–17 and Previous Epizootics of Highly Pathogenic Avian Influenza H5 Guangdong Lineage in Europe" 24, no. 12 (2018) Alarcon, Pablo et al. "Comparison of 2016–17 and Previous Epizootics of Highly Pathogenic Avian Influenza H5 Guangdong Lineage in Europe" vol. 24, no. 12, 2018 Export RIS Citation Information.

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Alarcon, Pablo ;

Brouwer, Adam

December 2018 | Emerg Infect Dis. 24(12):2270-2283

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We analyzed the highly pathogenic avian influenza (HPAI) H5 epizootic of 2016-17 in Europe by epidemiologic and genetic characteristics and compared i...
Recombination Resulting in Virulence Shift in Avian Influenza Outbreak, Chile

CITE Title : Recombination Resulting in Virulence Shift in Avian Influenza Outbreak, Chile Personal Author(s) : Suarez, David L.;Senne, Dennis A.;Banks, Jill;Brown, Ian H.;Essen, Steve C.;Lee, Chang-Won;Manvell, Ruth J.;Mathieu-Benson, Christian;Moreno, Valentine;Pedersen, Janice C.;Panigrahy, Brundaban;Rojas, Herman;Spackman, Eric;Alexander, Dennis J.; Published Date : Apr 2004 Source : Emerg Infect Dis. 10(4):693-699. URL : https://stacks.cdc.gov/view/cdc/14367 Suarez, David L. et al. (2004). Recombination Resulting in Virulence Shift in Avian Influenza Outbreak, Chile. 10(4). Suarez, David L. et al. "Recombination Resulting in Virulence Shift in Avian Influenza Outbreak, Chile" 10, no. 4 (2004) Suarez, David L. et al. "Recombination Resulting in Virulence Shift in Avian Influenza Outbreak, Chile" vol. 10, no. 4, 2004 Export RIS Citation Information.

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Suarez, David L. ;

Senne, Dennis A.

Apr 2004 | Emerg Infect Dis. 10(4):693-699.

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Influenza A viruses occur worldwide in wild birds and are occasionally associated with outbreaks in commercial chickens and turkeys. However, avian in...
Reassortant Pandemic (H1N1) 2009 Virus in Pigs, United Kingdom

CITE Title : Reassortant Pandemic (H1N1) 2009 Virus in Pigs, United Kingdom Personal Author(s) : Howard, Wendy A.;Essen, Steve C.;Strugnell, Benjamin W.;Russell, Christine;Barrass, Laura;Reid, Scott M.;Brown, Ian H.; Published Date : Jun 2011 Source : Emerg Infect Dis. 17(6):1049-1052. URL : https://stacks.cdc.gov/view/cdc/18523 Howard, Wendy A. et al. (2011). Reassortant Pandemic (H1N1) 2009 Virus in Pigs, United Kingdom. 17(6). Howard, Wendy A. et al. "Reassortant Pandemic (H1N1) 2009 Virus in Pigs, United Kingdom" 17, no. 6 (2011) Howard, Wendy A. et al. "Reassortant Pandemic (H1N1) 2009 Virus in Pigs, United Kingdom" vol. 17, no. 6, 2011 Export RIS Citation Information.

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Howard, Wendy A. ;

Essen, Steve C.

Jun 2011 | Emerg Infect Dis. 17(6):1049-1052.

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Surveillance for influenza virus in pigs in the United Kingdom during spring 2010 detected a novel reassortant influenza virus. This virus had genes e...
Genome Analysis Linking Recent European and African Influenza (H5N1) Viruses

CITE Title : Genome Analysis Linking Recent European and African Influenza (H5N1) Viruses Personal Author(s) : Salzberg, Steven L.;Kingsford, Carl;Cattoli, Giovanni;Spiro, David J.;Janies, Daniel A.;Aly, Mona Mehrez;Brown, Ian H.;Couacy-Hymann, Emmanuel;De Mia, Gian Mario;Dung, Do Huu;Guercio, Annalisa;Joannis, Tony;Ali, Ali Safar Maken;Osmani, Azizullah;Padalino, Iolanda;Saad, Magdi D.;Savić, Vladimir;Sengamalay, Naomi A.;Yingst, Samuel;Zaborsky, Jennifer;Zorman-Rojs, Olga;Ghedin, Elodie;Capua, Ilaria; Published Date : May 2007 Source : Emerg Infect Dis. 13(5):713-718. URL : https://stacks.cdc.gov/view/cdc/16667 Salzberg, Steven L. et al. (2007). Genome Analysis Linking Recent European and African Influenza (H5N1) Viruses. 13(5). Salzberg, Steven L. et al. "Genome Analysis Linking Recent European and African Influenza (H5N1) Viruses" 13, no. 5 (2007) Salzberg, Steven L. et al. "Genome Analysis Linking Recent European and African Influenza (H5N1) Viruses" vol. 13, no. 5, 2007 Export RIS Citation Information.

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Salzberg, Steven L. ;

Kingsford, Carl

May 2007 | Emerg Infect Dis. 13(5):713-718.

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To better understand the ecology and epidemiology of the highly pathogenic avian influenza virus in its transcontinental spread, we sequenced and anal...
Encephalitis and Death in Wild Mammals at a Rehabilitation Center after Infection with Highly Pathogenic Avian Influenza A(H5N8) Virus, United Kingdom

CITE Title : Encephalitis and Death in Wild Mammals at a Rehabilitation Center after Infection with Highly Pathogenic Avian Influenza A(H5N8) Virus, United Kingdom Personal Author(s) : Floyd, Tobias;Banyard, Ashley C.;Lean, Fabian Z.X.;Byrne, Alexander M.P.;Fullick, Edward;Whittard, Elliot;Mollett, Benjamin C.;Bexton, Steve;Swinson, Vanessa;Macrelli, Michele;Lewis, Nicola S.;Reid, Scott M.;Núñez, Alejandro;Duff, J. Paul;Hansen, Rowena;Brown, Ian H.; Published Date : 11 2021 Source : Emerg Infect Dis. 27(11):2856-2863 URL : https://stacks.cdc.gov/view/cdc/111445 Floyd, Tobias et al. (2021). Encephalitis and Death in Wild Mammals at a Rehabilitation Center after Infection with Highly Pathogenic Avian Influenza A(H5N8) Virus, United Kingdom. 27(11). Floyd, Tobias et al. "Encephalitis and Death in Wild Mammals at a Rehabilitation Center after Infection with Highly Pathogenic Avian Influenza A(H5N8) Virus, United Kingdom" 27, no. 11 (2021) Floyd, Tobias et al. "Encephalitis and Death in Wild Mammals at a Rehabilitation Center after Infection with Highly Pathogenic Avian Influenza A(H5N8) Virus, United Kingdom" vol. 27, no. 11, 2021 Export RIS Citation Information.

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Floyd, Tobias ;

Banyard, Ashley C.

11 2021 | Emerg Infect Dis. 27(11):2856-2863

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We report a disease and mortality event involving swans, seals, and a fox at a wildlife rehabilitation center in the United Kingdom during late 2020. ...
Genetic Characterization of Highly Pathogenic Avian Influenza (H5N8) Virus from Domestic Ducks, England, November 2014

CITE Title : Genetic Characterization of Highly Pathogenic Avian Influenza (H5N8) Virus from Domestic Ducks, England, November 2014 Personal Author(s) : Hanna, Amanda;Banks, Jill;Marston, Denise A.;Ellis, Richard J.;Brookes, Sharon M.;Brown, Ian H.; Published Date : May 2015 Source : Emerg Infect Dis. 21(5):879-882. URL : https://stacks.cdc.gov/view/cdc/30914 Hanna, Amanda et al. (2015). Genetic Characterization of Highly Pathogenic Avian Influenza (H5N8) Virus from Domestic Ducks, England, November 2014. 21(5). Hanna, Amanda et al. "Genetic Characterization of Highly Pathogenic Avian Influenza (H5N8) Virus from Domestic Ducks, England, November 2014" 21, no. 5 (2015) Hanna, Amanda et al. "Genetic Characterization of Highly Pathogenic Avian Influenza (H5N8) Virus from Domestic Ducks, England, November 2014" vol. 21, no. 5, 2015 Export RIS Citation Information.

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Hanna, Amanda ;

Banks, Jill

May 2015 | Emerg Infect Dis. 21(5):879-882.

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Genetic sequences of a highly pathogenic avian influenza (H5N8) virus in England have high homology to those detected in mainland Europe and Asia duri...
Genetic Characterization of HPAI (H5N1) Viruses from Poultry and Wild Vultures, Burkina Faso

CITE Title : Genetic Characterization of HPAI (H5N1) Viruses from Poultry and Wild Vultures, Burkina Faso Personal Author(s) : Ducatez, Mariette F.;Tarnagda, Zekiba;Tahita, Marc C.;Sow, Adama;de Landtsheer, Sebastien;Londt, Brandon Z.;Brown, Ian H.;Osterhaus, Albert D.M.E.;Fouchier, Ron A.M.;Ouedraogo, Jean-Bosco B.;Muller, Claude P.; Published Date : Apr 2007 Source : Emerg Infect Dis. 13(4):611-613. URL : https://stacks.cdc.gov/view/cdc/16598 Ducatez, Mariette F. et al. (2007). Genetic Characterization of HPAI (H5N1) Viruses from Poultry and Wild Vultures, Burkina Faso. 13(4). Ducatez, Mariette F. et al. "Genetic Characterization of HPAI (H5N1) Viruses from Poultry and Wild Vultures, Burkina Faso" 13, no. 4 (2007) Ducatez, Mariette F. et al. "Genetic Characterization of HPAI (H5N1) Viruses from Poultry and Wild Vultures, Burkina Faso" vol. 13, no. 4, 2007 Export RIS Citation Information.

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Ducatez, Mariette F. ;

Tarnagda, Zekiba

Apr 2007 | Emerg Infect Dis. 13(4):611-613.

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Genetic analysis of highly pathogenic avian influenza (H5N1) viruses from poultry and hooded vultures in Burkina Faso shows that these viruses belong ...
Prevalence of Avian Influenza A(H5) and A(H9) Viruses in Live Bird Markets, Bangladesh

CITE Title : Prevalence of Avian Influenza A(H5) and A(H9) Viruses in Live Bird Markets, Bangladesh Personal Author(s) : Kim, Younjung;Biswas, Paritosh K.;Giasuddin, Mohammad;Hasan, Mahmudul;Mahmud, Rashed;Chang, Yu-Mei;Essen, Steve;Samad, Mohammed A.;Lewis, Nicola S.;Brown, Ian H.;Moyen, Natalie;Hoque, Md. Ahasanul;Debnath, Nitish C.;Pfeiffer, Dirk U.;Fournié, Guillaume; Published Date : December 2018 Source : Emerg Infect Dis. 24(12):2309-2316 URL : https://stacks.cdc.gov/view/cdc/61357 Kim, Younjung et al. (2018). Prevalence of Avian Influenza A(H5) and A(H9) Viruses in Live Bird Markets, Bangladesh. 24(12). Kim, Younjung et al. "Prevalence of Avian Influenza A(H5) and A(H9) Viruses in Live Bird Markets, Bangladesh" 24, no. 12 (2018) Kim, Younjung et al. "Prevalence of Avian Influenza A(H5) and A(H9) Viruses in Live Bird Markets, Bangladesh" vol. 24, no. 12, 2018 Export RIS Citation Information.

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Kim, Younjung ;

Biswas, Paritosh K.

December 2018 | Emerg Infect Dis. 24(12):2309-2316

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We conducted a cross-sectional study in live bird markets (LBMs) in Dhaka and Chittagong, Bangladesh, to estimate the prevalence of avian influenza A(...
Interspecies Transmission of Swine Influenza A Viruses and Human Seasonal Vaccine-Mediated Protection Investigated in Ferret Model

CITE Title : Interspecies Transmission of Swine Influenza A Viruses and Human Seasonal Vaccine-Mediated Protection Investigated in Ferret Model Personal Author(s) : van Diemen, Pauline M.;Byrne, Alexander M.P.;Ramsay, Andrew M.;Watson, Samantha;Nunez, Alejandro;v Moreno, Ana;Chiapponi, Chiara;Foni, Emanuela;Brown, Ian H.;Brookes, Sharon M.;Everett, Helen E.; Published Date : 9 2023 Source : Emerg Infect Dis. 2023; 29(9):1798-1807 URL : https://stacks.cdc.gov/view/cdc/133568 van Diemen, Pauline M. et al. (2023). Interspecies Transmission of Swine Influenza A Viruses and Human Seasonal Vaccine-Mediated Protection Investigated in Ferret Model. 29(9). van Diemen, Pauline M. et al. "Interspecies Transmission of Swine Influenza A Viruses and Human Seasonal Vaccine-Mediated Protection Investigated in Ferret Model" 29, no. 9 (2023) van Diemen, Pauline M. et al. "Interspecies Transmission of Swine Influenza A Viruses and Human Seasonal Vaccine-Mediated Protection Investigated in Ferret Model" vol. 29, no. 9, 2023 Export RIS Citation Information.

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van Diemen, Pauline M. ;

Byrne, Alexander M.P.

9 2023 | Emerg Infect Dis. 2023; 29(9):1798-1807

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We investigated the infection dynamics of 2 influenza A(H1N1) virus isolates from the swine 1A.3.3.2 (pandemic 2009) and 1C (Eurasian, avian-like) lin...
Novel Swine Influenza Virus Reassortants in Pigs, China

CITE Title : Novel Swine Influenza Virus Reassortants in Pigs, China Personal Author(s) : Bi, Yuhai;Fu, Guanghua;Chen, Jing;Peng, Jinshan;Sun, Yipeng;Wang, Jingjing;Pu, Juan;Zhang, Yi;Gao, Huijie;Ma, Guangpeng;Tian, Fulin;Brown, Ian H.;Liu, Jinhua; Published Date : Jul 2010 Source : Emerg Infect Dis. 16(7):1162-1164. URL : https://stacks.cdc.gov/view/cdc/18191 Bi, Yuhai et al. (2010). Novel Swine Influenza Virus Reassortants in Pigs, China. 16(7). Bi, Yuhai et al. "Novel Swine Influenza Virus Reassortants in Pigs, China" 16, no. 7 (2010) Bi, Yuhai et al. "Novel Swine Influenza Virus Reassortants in Pigs, China" vol. 16, no. 7, 2010 Export RIS Citation Information.

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Bi, Yuhai ;

Fu, Guanghua

Jul 2010 | Emerg Infect Dis. 16(7):1162-1164.

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During swine influenza virus surveillance in pigs in China during 2006-2009, we isolated subtypes H1N1, H1N2, and H3N2 and found novel reassortment be...
Interspecies Transmission of Reassortant Swine Influenza A Virus Containing Genes from Swine Influenza A(H1N1)pdm09 and A(H1N2) Viruses

CITE Title : Interspecies Transmission of Reassortant Swine Influenza A Virus Containing Genes from Swine Influenza A(H1N1)pdm09 and A(H1N2) Viruses Personal Author(s) : Everett, Helen E.;Nash, Bethany;Londt, Brandon Z.;Kelly, Michael D.;Coward, Vivien;Nunez, Alejandro;van Diemen, Pauline M.;Brown, Ian H.;Brookes, Sharon M.; Published Date : Feb 2020 Source : Emerg Infect Dis. 26(2):273-281 URL : https://stacks.cdc.gov/view/cdc/84823 Everett, Helen E. et al. (2020). Interspecies Transmission of Reassortant Swine Influenza A Virus Containing Genes from Swine Influenza A(H1N1)pdm09 and A(H1N2) Viruses. 26(2). Everett, Helen E. et al. "Interspecies Transmission of Reassortant Swine Influenza A Virus Containing Genes from Swine Influenza A(H1N1)pdm09 and A(H1N2) Viruses" 26, no. 2 (2020) Everett, Helen E. et al. "Interspecies Transmission of Reassortant Swine Influenza A Virus Containing Genes from Swine Influenza A(H1N1)pdm09 and A(H1N2) Viruses" vol. 26, no. 2, 2020 Export RIS Citation Information.

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Everett, Helen E. ;

Nash, Bethany

Feb 2020 | Emerg Infect Dis. 26(2):273-281

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Influenza A(H1N1)pdm09 (pH1N1) virus has become established in swine in the United Kingdom and currently co-circulates with previously enzootic swine ...
Serologic Cross-Reactivity with Pandemic (H1N1) 2009 Virus in Pigs, Europe

CITE Title : Serologic Cross-Reactivity with Pandemic (H1N1) 2009 Virus in Pigs, Europe Personal Author(s) : Kyriakis, Constantinos S.;Olsen, Christopher W.;Carman, Susy;Brown, Ian H.;Brookes, Sharon M.;Van Doorsselaere, Jan;Van Reeth, Kristien; Published Date : Jan 2010 Source : Emerg Infect Dis. 16(1):96-99. URL : https://stacks.cdc.gov/view/cdc/18050 Kyriakis, Constantinos S. et al. (2010). Serologic Cross-Reactivity with Pandemic (H1N1) 2009 Virus in Pigs, Europe. 16(1). Kyriakis, Constantinos S. et al. "Serologic Cross-Reactivity with Pandemic (H1N1) 2009 Virus in Pigs, Europe" 16, no. 1 (2010) Kyriakis, Constantinos S. et al. "Serologic Cross-Reactivity with Pandemic (H1N1) 2009 Virus in Pigs, Europe" vol. 16, no. 1, 2010 Export RIS Citation Information.

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Kyriakis, Constantinos S. ;

Olsen, Christopher W.

Jan 2010 | Emerg Infect Dis. 16(1):96-99.

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We tested serum samples from pigs infected or vaccinated with European swine influenza viruses (SIVs) in hemagglutination-inhibition assays against pa...