Filovirus RefSeq Entries: Evaluation and Selection of Filovirus Type Variants, Type Sequences, and Names

Kuhn, Jens H.; Andersen, Kristian G.; Bào, Yīmíng; Bavari, Sina; Becker, Stephan; Bennett, Richard S.; Bergman, Nicholas H.; Blinkova, Olga; Bradfute, Steven; Brister, J. Rodney; Bukreyev, Alexander; Chandran, Kartik; Chepurnov, Alexander A.; Davey, Robert A.; Dietzgen, Ralf G.; Doggett, Norman A.; Dolnik, Olga; Dye, John M.; Enterlein, Sven; Fenimore, Paul W.; Formenty, Pierre; Freiberg, Alexander N.; Garry, Robert F.; Garza, Nicole L.; Gire, Stephen K.; Gonzalez, Jean-Paul; Griffiths, Anthony; Happi, Christian T.; Hensley, Lisa E.; Herbert, Andrew S.; Hevey, Michael C.; Hoenen, Thomas; Honko, Anna N.; Ignatyev, Georgy M.; Jahrling, Peter B.; Johnson, Joshua C.; Johnson, Karl M.; Kindrachuk, Jason; Klenk, Hans-Dieter; Kobinger, Gary; Kochel, Tadeusz J.; Lackemeyer, Matthew G.; Lackner, Daniel F.; Leroy, Eric M.; Lever, Mark S.; Mühlberger, Elke; Netesov, Sergey V.; Olinger, Gene G.; Omilabu, Sunday A.; Palacios, Gustavo; Panchal, Rekha G.; Park, Daniel J.; Patterson, Jean L.; Paweska, Janusz T.; Peters, Clarence J.; Pettitt, James; Pitt, Louise; Radoshitzky, Sheli R.; Ryabchikova, Elena I.; Saphire, Erica Ollmann; Sabeti, Pardis C.; Sealfon, Rachel; Shestopalov, Aleksandr M.; Smither, Sophie J.; Sullivan, Nancy J.; Swanepoel, Robert; Takada, Ayato; Towner, Jonathan S.; van der Groen, Guido; Volchkov, Viktor E.; Volchkova, Valentina A.; Wahl-Jensen, Victoria; Warren, Travis K.; Warfield, Kelly L.; Weidmann, Manfred; Nichol, Stuart T.

doi:10.3390/v6093663

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CDC STACKS serves as an archival repository of CDC-published products including scientific findings, journal articles, guidelines, recommendations, or other public health information authored or co-authored by CDC or funded partners. As a repository, CDC STACKS retains documents in their original published format to ensure public access to scientific information.

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Filovirus RefSeq Entries: Evaluation and Selection of Filovirus Type Variants, Type Sequences, and Names

Sep 26 2014
By Kuhn, Jens H. ; Andersen, Kristian G. ; Bào, Yīmíng ; ...
http://dx.doi.org/10.3390/v6093663
Source: Viruses. 2014; 6(9):3663-3682.

[PDF-654.84 KB]

English

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Alternative Title:

Viruses
Personal Author:

Kuhn, Jens H. ; Andersen, Kristian G. ; Bào, Yīmíng ; Bavari, Sina ; Becker, Stephan ; ... More +

Kuhn, Jens H. ; Andersen, Kristian G. ; Bào, Yīmíng ; Bavari, Sina ; Becker, Stephan ; Bennett, Richard S. ; Bergman, Nicholas H. ; Blinkova, Olga ; Bradfute, Steven ; Brister, J. Rodney ; Bukreyev, Alexander ; Chandran, Kartik ; Chepurnov, Alexander A. ; Davey, Robert A. ; Dietzgen, Ralf G. ; Doggett, Norman A. ; Dolnik, Olga ; Dye, John M. ; Enterlein, Sven ; Fenimore, Paul W. ; Formenty, Pierre ; Freiberg, Alexander N. ; Garry, Robert F. ; Garza, Nicole L. ; Gire, Stephen K. ; Gonzalez, Jean-Paul ; Griffiths, Anthony ; Happi, Christian T. ; Hensley, Lisa E. ; Herbert, Andrew S. ; Hevey, Michael C. ; Hoenen, Thomas ; Honko, Anna N. ; Ignatyev, Georgy M. ; Jahrling, Peter B. ; Johnson, Joshua C. ; Johnson, Karl M. ; Kindrachuk, Jason ; Klenk, Hans-Dieter ; Kobinger, Gary ; Kochel, Tadeusz J. ; Lackemeyer, Matthew G. ; Lackner, Daniel F. ; Leroy, Eric M. ; Lever, Mark S. ; Mühlberger, Elke ; Netesov, Sergey V. ; Olinger, Gene G. ; Omilabu, Sunday A. ; Palacios, Gustavo ; Panchal, Rekha G. ; Park, Daniel J. ; Patterson, Jean L. ; Paweska, Janusz T. ; Peters, Clarence J. ; Pettitt, James ; Pitt, Louise ; Radoshitzky, Sheli R. ; Ryabchikova, Elena I. ; Saphire, Erica Ollmann ; Sabeti, Pardis C. ; Sealfon, Rachel ; Shestopalov, Aleksandr M. ; Smither, Sophie J. ; Sullivan, Nancy J. ; Swanepoel, Robert ; Takada, Ayato ; Towner, Jonathan S. ; van der Groen, Guido ; Volchkov, Viktor E. ; Volchkova, Valentina A. ; Wahl-Jensen, Victoria ; Warren, Travis K. ; Warfield, Kelly L. ; Weidmann, Manfred ; Nichol, Stuart T. Less -
Description:

Sequence determination of complete or coding-complete genomes of viruses is becoming common practice for supporting the work of epidemiologists, ecologists, virologists, and taxonomists. Sequencing duration and costs are rapidly decreasing, sequencing hardware is under modification for use by non-experts, and software is constantly being improved to simplify sequence data management and analysis. Thus, analysis of virus disease outbreaks on the molecular level is now feasible, including characterization of the evolution of individual virus populations in single patients over time. The increasing accumulation of sequencing data creates a management problem for the curators of commonly used sequence databases and an entry retrieval problem for end users. Therefore, utilizing the data to their fullest potential will require setting nomenclature and annotation standards for virus isolates and associated genomic sequences. The National Center for Biotechnology Information's (NCBI's) RefSeq is a non-redundant, curated database for reference (or type) nucleotide sequence records that supplies source data to numerous other databases. Building on recently proposed templates for filovirus variant naming [ ()////-], we report consensus decisions from a majority of past and currently active filovirus experts on the eight filovirus type variants and isolates to be represented in RefSeq, their final designations, and their associated sequences.
Subjects:

[+]

Databases, Nucleic Acid Evolution, Molecular Filoviridae Humans Selection, Genetic
Source:

Viruses. 2014; 6(9):3663-3682.
Document Type:

Journal Article
Genre:

Letter
Volume:

6
Issue:

9
Collection(s):

CDC Public Access
Main Document Checksum:

[+]

urn:sha256:8d2843c604837b647be02b3af912b2375c7c0b09d6a025a35ac7de776924f6d1
Download URL:

https://stacks.cdc.gov/view/cdc/25557/cdc_25557_DS1.pdf
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	license.txt	txt
	viruses-06-03663-g001.gif	gif
	viruses-06-03663-g001.jpg	jpeg
	viruses-06-03663.nxml	txt

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